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3UJJ
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 4025 IN COMPLEX WITH CON A PEPTIDE
Authors
:
X. P. Kong, J. Sampson
Date
:
07 Nov 11 (Deposition) - 28 Dec 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : H,L,P
Biol. Unit 1: H,L,P (1x)
Keywords
:
Ig Domains, Antibody Fab, Antigen Binding, The Third Variable Region Of Hiv-1 Gp120, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Gorny, J. Sampson, H. Li, X. Jiang, M. Totrov, X. H. Wang, C. Williams, T. O'Neal, B. Volsky, L. Li, T. Cardozo, P. Nyambi, S. Zolla-Pazner, X. P. Kong
Human Anti-V3 Hiv-1 Monoclonal Antibodies Encoded By The Vh5-51/Vl Lambda Genes Define A Conserved Antigenic Structure.
Plos One V. 6 27780 2011
[
close entry info
]
Hetero Components
(3, 34)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
GOL
19
Ligand/Ion
GLYCEROL
3
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR L:2 , ASN L:92 , SER L:93 , GLY L:94 , HOH L:427
BINDING SITE FOR RESIDUE GOL L 212
02
AC2
SOFTWARE
GLN L:37 , VAL L:45 , PRO L:59 , HOH L:271 , HOH L:302 , HOH L:364 , HOH L:397
BINDING SITE FOR RESIDUE GOL L 213
03
AC3
SOFTWARE
ALA H:100 , TYR L:49 , ARG L:54 , PRO L:55 , SER L:56 , HOH L:252 , HOH L:333 , HOH L:350
BINDING SITE FOR RESIDUE GOL L 214
04
AC4
SOFTWARE
THR L:205 , ACT L:228 , HOH L:386 , THR P:303
BINDING SITE FOR RESIDUE GOL L 215
05
AC5
SOFTWARE
TYR H:91 , GLN L:38 , LYS L:39 , GLY L:41 , GLN L:42 , HOH L:308 , HOH L:327 , HOH L:349
BINDING SITE FOR RESIDUE GOL L 216
06
AC6
SOFTWARE
HOH H:339 , SER L:121 , SER L:122 , HOH L:372
BINDING SITE FOR RESIDUE GOL L 217
07
AC7
SOFTWARE
SER L:52 , LYS L:53 , ARG L:54 , SO4 L:224 , SO4 L:225 , HOH L:304 , HOH L:435 , HOH L:468
BINDING SITE FOR RESIDUE GOL L 218
08
AC8
SOFTWARE
HOH H:307 , HOH H:325 , GLN L:42 , ALA L:43 , VAL L:45 , HOH L:283 , HOH L:417
BINDING SITE FOR RESIDUE GOL L 219
09
AC9
SOFTWARE
HIS H:164 , GLN L:167 , SER L:168 , HOH L:341 , HOH L:464
BINDING SITE FOR RESIDUE SO4 L 220
10
BC1
SOFTWARE
PRO L:59 , ARG L:61 , GLN L:79 , ASP L:81 , HOH L:271
BINDING SITE FOR RESIDUE SO4 L 221
11
BC2
SOFTWARE
SER L:40 , GLU L:83 , LYS L:103 , TYR L:172 , HOH L:359
BINDING SITE FOR RESIDUE SO4 L 222
12
BC3
SOFTWARE
PRO L:154 , VAL L:155 , LYS L:156 , ALA L:157
BINDING SITE FOR RESIDUE SO4 L 223
13
BC4
SOFTWARE
ARG L:54 , SER L:63 , GOL L:218 , HOH L:249 , HOH L:276
BINDING SITE FOR RESIDUE SO4 L 224
14
BC5
SOFTWARE
LYS L:53 , LYS L:186 , ARG L:189 , GOL L:218 , HOH L:435 , HOH L:468
BINDING SITE FOR RESIDUE SO4 L 225
15
BC6
SOFTWARE
THR L:18 , ARG L:20 , HOH L:434
BINDING SITE FOR RESIDUE ACT L 226
16
BC7
SOFTWARE
ASN L:112 , THR L:114 , VAL L:115 , LYS L:204
BINDING SITE FOR RESIDUE ACT L 227
17
BC8
SOFTWARE
GLU L:198 , GLY L:199 , GLU L:203 , THR L:205 , GOL L:215 , HOH L:474 , ACT P:2
BINDING SITE FOR RESIDUE ACT L 228
18
BC9
SOFTWARE
ALA H:125 , SER H:127 , ALA H:137 , LYS H:214 , HOH H:372 , HOH H:412 , LEU L:117 , PHE L:118 , PRO L:119
BINDING SITE FOR RESIDUE GOL H 220
19
CC1
SOFTWARE
SER H:55 , ASP H:56 , THR H:57 , HOH H:247 , THR L:5 , GLN L:6 , THR L:100
BINDING SITE FOR RESIDUE GOL H 221
20
CC2
SOFTWARE
SER H:130 , THR H:131 , SER H:132 , GLY H:133 , SER H:186 , SER H:187 , ACT H:233 , HOH H:426
BINDING SITE FOR RESIDUE GOL H 222
21
CC3
SOFTWARE
GLY H:65 , GLN H:66 , GLY H:67 , TRP H:82 , SER H:82A , SER H:82B , HOH H:368 , HOH H:443
BINDING SITE FOR RESIDUE GOL H 223
22
CC4
SOFTWARE
MET H:40 , LYS H:43 , GLY H:44 , GLU H:46 , HOH H:239 , HOH L:438
BINDING SITE FOR RESIDUE GOL H 224
23
CC5
SOFTWARE
LYS H:117 , SER H:120 , ASP H:144 , HOH H:405 , LYS L:129 , HOH L:313
BINDING SITE FOR RESIDUE GOL H 225
24
CC6
SOFTWARE
TYR H:27 , SER H:28 , PHE H:29 , SER H:30 , HOH H:323
BINDING SITE FOR RESIDUE GOL H 226
25
CC7
SOFTWARE
GLY H:118 , SER H:120 , VAL H:121 , PHE H:122 , THR H:205 , VAL H:207 , LYS H:209 , HOH H:248 , HOH H:329 , GLU L:123
BINDING SITE FOR RESIDUE GOL H 227
26
CC8
SOFTWARE
LYS H:83 , ALA H:84 , SER H:85 , HOH H:343 , HOH H:373 , HOH H:479
BINDING SITE FOR RESIDUE GOL H 228
27
CC9
SOFTWARE
PRO H:41 , LEU H:170 , TYR H:176 , HOH H:319 , HOH H:370 , HOH H:480
BINDING SITE FOR RESIDUE GOL H 229
28
DC1
SOFTWARE
ARG H:38 , SER H:62 , PHE H:63 , GLN H:66 , LYS H:83 , HOH H:299 , HOH H:333
BINDING SITE FOR RESIDUE GOL H 230
29
DC2
SOFTWARE
GLN H:171 , SER H:172 , HOH H:237 , HOH H:298 , HOH H:300 , HOH H:303 , GLY L:158 , GLU L:160 , SER L:179
BINDING SITE FOR RESIDUE SO4 H 231
30
DC3
SOFTWARE
TYR H:27 , SER H:28 , TYR H:32 , HOH H:377 , ARG P:304
BINDING SITE FOR RESIDUE SO4 H 232
31
DC4
SOFTWARE
SER H:127 , SER H:128 , LYS H:129 , SER H:186 , LEU H:189 , THR H:219 , GOL H:222
BINDING SITE FOR RESIDUE ACT H 233
32
DC5
SOFTWARE
SER H:30 , LYS H:73
BINDING SITE FOR RESIDUE ACT H 234
33
DC6
SOFTWARE
GLY H:26 , HOH H:421
BINDING SITE FOR RESIDUE ACT H 235
34
DC7
SOFTWARE
ACT L:228 , THR P:303 , HOH P:414
BINDING SITE FOR RESIDUE ACT P 2
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
Atom Selection
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)
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Nucleic
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Sidechain
Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain H
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Chain P
Asymmetric Unit 1
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