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3UH1
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SACCHAROPINE DEHYDROGENASE FROM SACCHAROMYCES CEREVISIAE WITH BOUND SACCHAROPINE AND NADH
Authors
:
V. P. Kumar, L. M. Thomas, K. D. Bobyk, B. Andi, A. H. West, P. F. Cook
Date
:
03 Nov 11 (Deposition) - 01 Feb 12 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Enzyme Mechanisms, Lysine Biosynthesis, Proton Shuttle, Saccharopine And Nad Binding, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. P. Kumar, L. M. Thomas, K. D. Bobyk, B. Andi, P. F. Cook, A. H. West
Evidence In Support Of Lysine 77 And Histidine 96 As Acid-Base Catalytic Residues In Saccharopine Dehydrogenase From Saccharomyces Cerevisiae.
Biochemistry V. 51 857 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
3a: N-(5-AMINO-5-CARBOXYPENTYL)GLUTAMI... (SHRa)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
NAI
1
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
SHR
1
Ligand/Ion
N-(5-AMINO-5-CARBOXYPENTYL)GLUTAMIC ACID
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Sites
(3, 3)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:139 , ILE A:199 , GLY A:200 , GLY A:203 , ARG A:204 , SER A:205 , ASP A:227 , ILE A:228 , THR A:231 , CYS A:249 , ILE A:250 , TYR A:251 , ILE A:256 , VAL A:278 , SER A:279 , ILE A:318 , ASP A:319 , HIS A:320 , LEU A:321 , PRO A:322 , SHR A:375 , HOH A:380 , HOH A:387 , HOH A:392 , HOH A:400 , HOH A:412 , HOH A:434 , HOH A:506
BINDING SITE FOR RESIDUE NAI A 374
2
AC2
SOFTWARE
ARG A:18 , LYS A:77 , PHE A:94 , HIS A:96 , LYS A:99 , GLN A:101 , ARG A:131 , ALA A:134 , PHE A:135 , SER A:279 , ASP A:281 , ASP A:319 , PRO A:322 , NAI A:374 , HOH A:387 , HOH A:400 , HOH A:404
BINDING SITE FOR RESIDUE SHR A 375
3
AC3
SOFTWARE
VAL A:132 , ALA A:133 , ALA A:134 , ARG A:204 , PHE A:332 , ASP A:336 , HOH A:491
BINDING SITE FOR RESIDUE GOL A 376
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(1, 1)
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All Exons
Exon 1.1 (A:3-369)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YIR034C
1
YIR034C.1
IX:420733-419612
1122
LYS1_YEAST
1-373
373
1
A:3-369
367
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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