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3UFK
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UNDA COMPLEXED WITH IRON NITRILOTRIACETATE
Authors
:
M. J. Edwards, T. A. Clarke
Date
:
01 Nov 11 (Deposition) - 08 Aug 12 (Release) - 08 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
C-Type Cytochrome, Electron Transport, Outer Membrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Edwards, A. Hall, L. Shi, J. K. Fredrickson, J. M. Zachara, J. N. Butt, D. J. Richardson, T. A. Clarke
The Crystal Structure Of The Extracellular 11-Heme Cytochrome Unda Reveals A Conserved 10-Heme Motif And Defined Binding Site For Soluble Iron Chelates.
Structure V. 20 1275 2012
[
close entry info
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Hetero Components
(7, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: HEME C (HECa)
4b: HEME C (HECb)
4c: HEME C (HECc)
4d: HEME C (HECd)
4e: HEME C (HECe)
4f: HEME C (HECf)
4g: HEME C (HECg)
4h: HEME C (HECh)
4i: HEME C (HECi)
4j: HEME C (HECj)
4k: HEME C (HECk)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: NITRILOTRIACETIC ACID (NTAa)
6b: NITRILOTRIACETIC ACID (NTAb)
6c: NITRILOTRIACETIC ACID (NTAc)
6d: NITRILOTRIACETIC ACID (NTAd)
7a: OXYGEN ATOM (Oa)
7b: OXYGEN ATOM (Ob)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
FE
4
Ligand/Ion
FE (III) ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
HEC
11
Ligand/Ion
HEME C
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
NTA
4
Ligand/Ion
NITRILOTRIACETIC ACID
7
O
2
Ligand/Ion
OXYGEN ATOM
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:251 , CYS A:252 , CYS A:255 , HIS A:256 , HIS A:310 , THR A:353 , VAL A:356 , SER A:363 , CYS A:364 , THR A:743 , PRO A:745 , HOH A:1068 , HOH A:1538 , HOH A:1680
BINDING SITE FOR RESIDUE HEC A 901
02
AC2
SOFTWARE
GLN A:158 , ASN A:160 , ILE A:161 , LEU A:272 , HIS A:273 , ARG A:277 , ILE A:278 , ASN A:282 , CYS A:283 , CYS A:286 , HIS A:287 , ASP A:293 , MET A:305 , MET A:316 , VAL A:317 , GLY A:318 , CA A:912 , HOH A:1488 , HOH A:1511 , HOH A:1535
BINDING SITE FOR RESIDUE HEC A 902
03
AC3
SOFTWARE
THR A:110 , GLN A:112 , ARG A:243 , GLN A:284 , MET A:302 , GLY A:303 , VAL A:306 , HIS A:307 , HIS A:310 , CYS A:361 , CYS A:364 , HIS A:365 , SER A:377 , PHE A:378 , HIS A:380 , LYS A:382 , ALA A:385 , HIS A:460 , HEC A:904 , HOH A:1331 , HOH A:1468 , HOH A:1577
BINDING SITE FOR RESIDUE HEC A 903
04
AC4
SOFTWARE
HIS A:307 , ILE A:358 , GLY A:359 , ALA A:385 , CYS A:386 , CYS A:389 , HIS A:390 , ASN A:434 , LEU A:435 , SER A:456 , TYR A:459 , HIS A:460 , LYS A:463 , HEC A:903 , HOH A:1002 , HOH A:1525 , HOH A:1620 , HOH A:1639 , HOH A:1778 , HOH A:1910
BINDING SITE FOR RESIDUE HEC A 904
05
AC5
SOFTWARE
GLY A:105 , LYS A:106 , LYS A:109 , HIS A:381 , GLY A:383 , ARG A:412 , GLY A:416 , PHE A:419 , HIS A:420 , PHE A:439 , CYS A:444 , CYS A:447 , HIS A:448 , HOH A:1405 , HOH A:1531 , HOH A:1665 , HOH A:1845
BINDING SITE FOR RESIDUE HEC A 905
06
AC6
SOFTWARE
THR A:353 , ILE A:648 , LYS A:652 , CYS A:653 , CYS A:656 , HIS A:657 , PHE A:663 , SER A:666 , ILE A:724 , HIS A:728 , ARG A:735 , ALA A:742 , THR A:743 , PHE A:744 , GLU A:746 , ALA A:753 , HEC A:908 , HOH A:1228 , HOH A:1248 , HOH A:1259 , HOH A:1294 , HOH A:1309 , HOH A:1632 , HOH A:1825
BINDING SITE FOR RESIDUE HEC A 906
07
AC7
SOFTWARE
MET A:525 , ARG A:528 , ARG A:536 , THR A:670 , HIS A:671 , CYS A:680 , CYS A:683 , HIS A:684 , PRO A:707 , HIS A:709 , SER A:710 , LYS A:711 , LYS A:712 , PHE A:718 , ARG A:736 , HEC A:908 , NTA A:919 , HOH A:1003 , HOH A:1218
BINDING SITE FOR RESIDUE HEC A 907
08
AC8
SOFTWARE
PHE A:663 , HIS A:667 , LEU A:669 , THR A:670 , THR A:682 , CYS A:683 , HIS A:684 , ASN A:689 , CYS A:699 , CYS A:702 , HIS A:703 , PHE A:718 , ARG A:732 , ARG A:735 , ARG A:736 , HEC A:906 , HEC A:907 , MG A:913 , HOH A:1004 , HOH A:1224 , HOH A:1228
BINDING SITE FOR RESIDUE HEC A 908
09
AC9
SOFTWARE
ARG A:644 , VAL A:647 , ILE A:648 , PHE A:720 , LYS A:721 , ILE A:724 , HIS A:725 , HIS A:728 , PRO A:748 , ALA A:749 , CYS A:751 , CYS A:754 , HIS A:755 , LEU A:762 , ALA A:784 , VAL A:835 , HIS A:839 , HEC A:910 , HOH A:1274 , HOH A:1297 , HOH A:1308 , HOH A:1333 , HOH A:1455 , HOH A:1964
BINDING SITE FOR RESIDUE HEC A 909
10
BC1
SOFTWARE
SER A:264 , SER A:265 , THR A:266 , GLU A:407 , HIS A:725 , PRO A:748 , ALA A:784 , CYS A:785 , CYS A:788 , HIS A:789 , HIS A:827 , VAL A:835 , VAL A:838 , HIS A:839 , HEC A:909 , HEC A:911 , HOH A:1114
BINDING SITE FOR RESIDUE HEC A 910
11
BC2
SOFTWARE
HIS A:789 , HIS A:801 , PHE A:802 , ASN A:805 , THR A:822 , CYS A:823 , CYS A:826 , HIS A:827 , PHE A:833 , HEC A:910 , HOH A:1114 , HOH A:1737
BINDING SITE FOR RESIDUE HEC A 911
12
BC3
SOFTWARE
ASP A:293 , GLU A:295 , VAL A:317 , HEC A:902 , HOH A:1488 , HOH A:1535
BINDING SITE FOR RESIDUE CA A 912
13
BC4
SOFTWARE
HIS A:667 , THR A:670 , HIS A:684 , HEC A:908
BINDING SITE FOR RESIDUE MG A 913
14
BC5
SOFTWARE
VAL A:548 , ASN A:551 , LEU A:554 , HOH A:1390 , HOH A:1472 , HOH A:1537
BINDING SITE FOR RESIDUE MG A 914
15
BC6
SOFTWARE
FE A:916 , O A:917 , NTA A:918 , HOH A:1009
BINDING SITE FOR RESIDUE FE A 915
16
BC7
SOFTWARE
FE A:915 , O A:917 , NTA A:919 , HOH A:1193
BINDING SITE FOR RESIDUE FE A 916
17
BC8
SOFTWARE
ARG A:528 , HIS A:709 , SER A:710 , FE A:915 , FE A:916 , NTA A:918 , NTA A:919
BINDING SITE FOR RESIDUE O A 917
18
BC9
SOFTWARE
HIS A:709 , SER A:710 , LYS A:711 , FE A:915 , O A:917 , NTA A:919 , HOH A:1009 , HOH A:1351
BINDING SITE FOR RESIDUE NTA A 918
19
CC1
SOFTWARE
ARG A:528 , HIS A:709 , SER A:710 , HEC A:907 , FE A:916 , O A:917 , NTA A:918 , HOH A:1181 , HOH A:1193
BINDING SITE FOR RESIDUE NTA A 919
20
CC2
SOFTWARE
GLU A:659 , FE A:921 , O A:922 , NTA A:924
BINDING SITE FOR RESIDUE FE A 920
21
CC3
SOFTWARE
GLU A:659 , FE A:920 , O A:922 , NTA A:923
BINDING SITE FOR RESIDUE FE A 921
22
CC4
SOFTWARE
GLU A:659 , FE A:920 , FE A:921 , NTA A:923 , NTA A:924
BINDING SITE FOR RESIDUE O A 922
23
CC5
SOFTWARE
LYS A:468 , ARG A:471 , GLU A:659 , LYS A:660 , FE A:921 , O A:922 , HOH A:1196
BINDING SITE FOR RESIDUE NTA A 923
24
CC6
SOFTWARE
GLU A:659 , LYS A:660 , FE A:920 , O A:922 , HOH A:1010 , HOH A:1195 , HOH A:1445
BINDING SITE FOR RESIDUE NTA A 924
25
CC7
SOFTWARE
TYR A:421 , TYR A:422 , ALA A:423 , THR A:424 , HOH A:1601 , HOH A:1791
BINDING SITE FOR RESIDUE GOL A 925
26
CC8
SOFTWARE
ASN A:160 , ARG A:277 , HOH A:1511 , HOH A:1753
BINDING SITE FOR RESIDUE GOL A 926
27
CC9
SOFTWARE
GLN A:362 , HIS A:365 , SER A:366 , THR A:367 , ASP A:368 , HOH A:1265 , HOH A:1359
BINDING SITE FOR RESIDUE GOL A 927
28
DC1
SOFTWARE
ASP A:730 , SER A:733 , VAL A:734 , ARG A:735 , THR A:738 , THR A:739 , ASP A:740 , ALA A:741 , HOH A:1602
BINDING SITE FOR RESIDUE GOL A 928
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
[
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