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3UFH
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UNDA WITH IRON CITRATE BOUND
Authors
:
M. J. Edwards, T. A. Clarke
Date
:
01 Nov 11 (Deposition) - 08 Aug 12 (Release) - 08 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.23
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
C-Type Cytochrome, Electron Transfer, C-Type Hemes, Outermembrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Edwards, A. Hall, L. Shi, J. K. Fredrickson, J. M. Zachara, J. N. Butt, D. J. Richardson, T. A. Clarke
The Crystal Structure Of The Extracellular 11-Heme Cytochrome Unda Reveals A Conserved 10-Heme Motif And Defined Binding Site For Soluble Iron Chelates.
Structure V. 20 1275 2012
[
close entry info
]
Hetero Components
(7, 22)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3a: CITRATE ANION (FLCa)
3b: CITRATE ANION (FLCb)
3c: CITRATE ANION (FLCc)
4a: GLYCEROL (GOLa)
5a: HEME C (HECa)
5b: HEME C (HECb)
5c: HEME C (HECc)
5d: HEME C (HECd)
5e: HEME C (HECe)
5f: HEME C (HECf)
5g: HEME C (HECg)
5h: HEME C (HECh)
5i: HEME C (HECi)
5j: HEME C (HECj)
5k: HEME C (HECk)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
7a: OXYGEN ATOM (Oa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
FE
3
Ligand/Ion
FE (III) ION
3
FLC
3
Ligand/Ion
CITRATE ANION
4
GOL
1
Ligand/Ion
GLYCEROL
5
HEC
11
Ligand/Ion
HEME C
6
MG
2
Ligand/Ion
MAGNESIUM ION
7
O
1
Ligand/Ion
OXYGEN ATOM
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:789 , HIS A:801 , PHE A:802 , ASN A:805 , THR A:822 , CYS A:823 , CYS A:826 , HIS A:827 , PHE A:833 , HEC A:911 , HOH A:1797
BINDING SITE FOR RESIDUE HEC A 901
02
AC2
SOFTWARE
ARG A:644 , VAL A:647 , ILE A:648 , PHE A:720 , LYS A:721 , ILE A:724 , HIS A:725 , HIS A:728 , PRO A:748 , CYS A:751 , CYS A:754 , HIS A:755 , LEU A:760 , LEU A:762 , HIS A:839 , HEC A:911 , HOH A:1119 , HOH A:1205 , HOH A:1229 , HOH A:1304 , HOH A:1649
BINDING SITE FOR RESIDUE HEC A 902
03
AC3
SOFTWARE
THR A:353 , ILE A:648 , LYS A:652 , CYS A:653 , CYS A:656 , HIS A:657 , SER A:666 , ILE A:724 , HIS A:728 , ARG A:735 , THR A:743 , PHE A:744 , ALA A:753 , HEC A:905 , GOL A:922 , HOH A:1082 , HOH A:1093 , HOH A:1094 , HOH A:1131 , HOH A:1331 , HOH A:1492 , HOH A:1605
BINDING SITE FOR RESIDUE HEC A 903
04
AC4
SOFTWARE
MET A:525 , ARG A:528 , ARG A:536 , THR A:670 , HIS A:671 , CYS A:680 , CYS A:683 , HIS A:684 , HIS A:709 , SER A:710 , LYS A:711 , LYS A:712 , PHE A:718 , ARG A:736 , HEC A:905 , FLC A:919 , HOH A:1024 , HOH A:1028
BINDING SITE FOR RESIDUE HEC A 904
05
AC5
SOFTWARE
ARG A:540 , HIS A:667 , LEU A:669 , THR A:670 , THR A:682 , CYS A:683 , HIS A:684 , ASN A:689 , CYS A:699 , CYS A:702 , HIS A:703 , PHE A:718 , MET A:723 , ARG A:732 , ARG A:735 , ARG A:736 , HEC A:903 , HEC A:904 , MG A:914 , HOH A:1034 , HOH A:1045 , HOH A:1093
BINDING SITE FOR RESIDUE HEC A 905
06
AC6
SOFTWARE
ASN A:251 , CYS A:252 , CYS A:255 , HIS A:256 , LEU A:272 , HIS A:310 , VAL A:356 , SER A:363 , CYS A:656 , THR A:743 , PRO A:745 , HOH A:1511 , HOH A:1586 , HOH A:1652 , HOH A:1722
BINDING SITE FOR RESIDUE HEC A 906
07
AC7
SOFTWARE
GLN A:158 , ASN A:160 , LEU A:272 , HIS A:273 , ARG A:277 , ILE A:278 , ASN A:282 , CYS A:283 , CYS A:286 , HIS A:287 , ASP A:293 , MET A:316 , VAL A:317 , GLY A:318 , CA A:913 , HOH A:1168 , HOH A:1412 , HOH A:1639 , HOH A:1673
BINDING SITE FOR RESIDUE HEC A 907
08
AC8
SOFTWARE
THR A:110 , GLN A:112 , ARG A:243 , GLN A:284 , MET A:302 , GLY A:303 , HIS A:307 , HIS A:310 , GLY A:359 , CYS A:361 , CYS A:364 , HIS A:365 , SER A:377 , PHE A:378 , HIS A:380 , LYS A:382 , ALA A:385 , HIS A:460 , HEC A:909 , HOH A:1414 , HOH A:1646
BINDING SITE FOR RESIDUE HEC A 908
09
AC9
SOFTWARE
HIS A:307 , ILE A:358 , GLY A:359 , HIS A:380 , ALA A:385 , CYS A:386 , CYS A:389 , HIS A:390 , VAL A:433 , ASN A:434 , LEU A:435 , SER A:456 , TYR A:459 , HIS A:460 , LYS A:463 , HEC A:908 , HOH A:1001 , HOH A:1392 , HOH A:1469 , HOH A:1651 , HOH A:1707
BINDING SITE FOR RESIDUE HEC A 909
10
BC1
SOFTWARE
GLY A:105 , LYS A:106 , LYS A:109 , HIS A:381 , GLY A:383 , ARG A:412 , GLY A:416 , PHE A:419 , HIS A:420 , LEU A:435 , PHE A:439 , CYS A:444 , CYS A:447 , HIS A:448 , HOH A:1216 , HOH A:1467 , HOH A:1640 , HOH A:1696
BINDING SITE FOR RESIDUE HEC A 910
11
BC2
SOFTWARE
SER A:264 , SER A:265 , THR A:266 , GLU A:407 , HIS A:725 , PRO A:748 , ALA A:784 , CYS A:785 , CYS A:788 , HIS A:789 , HIS A:827 , VAL A:835 , VAL A:838 , HIS A:839 , HEC A:901 , HEC A:902
BINDING SITE FOR RESIDUE HEC A 911
12
BC3
SOFTWARE
VAL A:548 , ASN A:551 , LEU A:554 , HOH A:1199 , HOH A:1265 , HOH A:1271
BINDING SITE FOR RESIDUE MG A 912
13
BC4
SOFTWARE
ASP A:293 , GLU A:295 , VAL A:317 , HEC A:907 , HOH A:1168 , HOH A:1412
BINDING SITE FOR RESIDUE CA A 913
14
BC5
SOFTWARE
HIS A:667 , THR A:670 , HIS A:684 , HEC A:905
BINDING SITE FOR RESIDUE MG A 914
15
BC6
SOFTWARE
FE A:916 , FE A:917 , FLC A:919 , FLC A:920 , O A:921 , HOH A:1018
BINDING SITE FOR RESIDUE FE A 915
16
BC7
SOFTWARE
FE A:915 , FE A:917 , FLC A:918 , FLC A:919 , O A:921
BINDING SITE FOR RESIDUE FE A 916
17
BC8
SOFTWARE
FE A:915 , FE A:916 , FLC A:918 , FLC A:919 , FLC A:920
BINDING SITE FOR RESIDUE FE A 917
18
BC9
SOFTWARE
THR A:491 , PHE A:492 , THR A:493 , THR A:564 , FE A:916 , FE A:917 , FLC A:919 , FLC A:920 , O A:921 , HOH A:1002 , HOH A:1033 , HOH A:1129
BINDING SITE FOR RESIDUE FLC A 918
19
CC1
SOFTWARE
ARG A:528 , HIS A:709 , SER A:710 , HEC A:904 , FE A:915 , FE A:916 , FE A:917 , FLC A:918 , FLC A:920 , O A:921 , HOH A:1018 , HOH A:1060
BINDING SITE FOR RESIDUE FLC A 919
20
CC2
SOFTWARE
FE A:915 , FE A:917 , FLC A:918 , FLC A:919 , O A:921 , HOH A:1002 , HOH A:1003 , HOH A:1315
BINDING SITE FOR RESIDUE FLC A 920
21
CC3
SOFTWARE
FE A:915 , FE A:916 , FLC A:918 , FLC A:919 , FLC A:920 , HOH A:1017 , HOH A:1018 , HOH A:1315
BINDING SITE FOR RESIDUE O A 921
22
CC4
SOFTWARE
PRO A:355 , HIS A:657 , ASP A:662 , PHE A:663 , HEC A:903 , HOH A:1331
BINDING SITE FOR RESIDUE GOL A 922
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
[
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Chain A
Asymmetric Unit 1
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