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Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (127 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TOPBP1 BRCT4/5 DOMAINS IN COMPLEX WITH A PHOSPHO-PEPTIDE
Authors
:
C. C. Leung, J. N. M. Glover
Date
:
31 Oct 11 (Deposition) - 03 Jul 13 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,F (1x)
Biol. Unit 2: B,D,E (1x)
Keywords
:
Brct Domain, Phospho-Peptide Binding, Peptide Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Leung, L. Sun, Z. Gong, M. Burkat, R. Edwards, M. Assmus, J. Chen, J. N. Glover
Structural Insights Into Recognition Of Mdc1 By Topbp1 In Dna Replication Checkpoint Control.
Structure V. 21 1450 2013
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOSERINE (SEPa)
1b: PHOSPHOSERINE (SEPb)
2a: PHOSPHOTHREONINE (TPOa)
2b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
2
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BRCT (-|-|-|-|A:641-738,B:641-738,C:641-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
TOPB1_HUMAN
101-172
195-284
354-444
548-633
641-738
900-991
1259-1351
4
-
-
-
-
A:641-738
B:641-738
C:641-738
D:641-738
-
-
[
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Exons
(4, 14)
Info
All Exons
Exon 1.10c (A:551-616 (gaps) | B:551-616 (gaps...)
Exon 1.11 (A:617-674 | B:617-674 | C:617-674 ...)
Exon 1.12 (A:674-741 | B:674-741 | C:674-742 ...)
Exon 2.41n (E:1-10 | F:3-10)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9d/1.10c
2: Boundary 1.10c/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 2.41j/2.41n
6: Boundary 2.41n/2.41v
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260810
1
ENSE00001289464
chr3:
133380737-133380613
125
TOPB1_HUMAN
-
0
0
-
-
1.2
ENST00000260810
2
ENSE00000933924
chr3:
133379978-133379888
91
TOPB1_HUMAN
1-28
28
0
-
-
1.3
ENST00000260810
3
ENSE00001018318
chr3:
133377994-133377860
135
TOPB1_HUMAN
29-73
45
0
-
-
1.4
ENST00000260810
4
ENSE00000933926
chr3:
133376785-133376642
144
TOPB1_HUMAN
74-121
48
0
-
-
1.5a
ENST00000260810
5a
ENSE00000933927
chr3:
133375701-133375520
182
TOPB1_HUMAN
122-182
61
0
-
-
1.6
ENST00000260810
6
ENSE00001078162
chr3:
133374330-133374134
197
TOPB1_HUMAN
182-248
67
0
-
-
1.7
ENST00000260810
7
ENSE00001078164
chr3:
133372368-133372189
180
TOPB1_HUMAN
248-308
61
0
-
-
1.8a
ENST00000260810
8a
ENSE00001289360
chr3:
133371473-133371307
167
TOPB1_HUMAN
308-363
56
0
-
-
1.9b
ENST00000260810
9b
ENSE00001289349
chr3:
133368787-133368624
164
TOPB1_HUMAN
364-418
55
0
-
-
1.9d
ENST00000260810
9d
ENSE00001289339
chr3:
133368477-133368227
251
TOPB1_HUMAN
418-502
85
0
-
-
1.10c
ENST00000260810
10c
ENSE00001078161
chr3:
133363207-133362864
344
TOPB1_HUMAN
502-616
115
4
A:551-616 (gaps)
B:551-616 (gaps)
C:551-616 (gaps)
D:551-616 (gaps)
66
66
66
66
1.11
ENST00000260810
11
ENSE00000933934
chr3:
133362216-133362044
173
TOPB1_HUMAN
617-674
58
4
A:617-674
B:617-674
C:617-674
D:617-674
58
58
58
58
1.12
ENST00000260810
12
ENSE00001078166
chr3:
133359014-133358803
212
TOPB1_HUMAN
674-745
72
4
A:674-741
B:674-741
C:674-742
D:674-742
68
68
69
69
1.13
ENST00000260810
13
ENSE00001150558
chr3:
133357006-133356720
287
TOPB1_HUMAN
745-840
96
0
-
-
1.14a
ENST00000260810
14a
ENSE00001150552
chr3:
133347577-133347404
174
TOPB1_HUMAN
841-898
58
0
-
-
1.15a
ENST00000260810
15a
ENSE00000933939
chr3:
133347315-133347206
110
TOPB1_HUMAN
899-935
37
0
-
-
1.16
ENST00000260810
16
ENSE00000933940
chr3:
133343019-133342896
124
TOPB1_HUMAN
935-976
42
0
-
-
1.17
ENST00000260810
17
ENSE00001078177
chr3:
133342301-133342155
147
TOPB1_HUMAN
977-1025
49
0
-
-
1.18
ENST00000260810
18
ENSE00001078179
chr3:
133342037-133341935
103
TOPB1_HUMAN
1026-1060
35
0
-
-
1.19
ENST00000260810
19
ENSE00000933943
chr3:
133339191-133338999
193
TOPB1_HUMAN
1060-1124
65
0
-
-
1.20a
ENST00000260810
20a
ENSE00001289481
chr3:
133337277-133337057
221
TOPB1_HUMAN
1124-1198
75
0
-
-
1.21b
ENST00000260810
21b
ENSE00000933945
chr3:
133336170-133336004
167
TOPB1_HUMAN
1198-1253
56
0
-
-
1.22b
ENST00000260810
22b
ENSE00000933946
chr3:
133335769-133335658
112
TOPB1_HUMAN
1254-1291
38
0
-
-
1.23
ENST00000260810
23
ENSE00000933947
chr3:
133331396-133331233
164
TOPB1_HUMAN
1291-1345
55
0
-
-
1.24
ENST00000260810
24
ENSE00000933948
chr3:
133329985-133329848
138
TOPB1_HUMAN
1346-1391
46
0
-
-
1.25
ENST00000260810
25
ENSE00000933949
chr3:
133327806-133327717
90
TOPB1_HUMAN
1392-1421
30
0
-
-
1.26
ENST00000260810
26
ENSE00001150487
chr3:
133327540-133327379
162
TOPB1_HUMAN
1422-1475
54
0
-
-
1.27
ENST00000260810
27
ENSE00001289455
chr3:
133320237-133319417
821
TOPB1_HUMAN
1476-1522
47
0
-
-
2.37a
ENST00000376406
37a
ENSE00001835419
chr6:
30685666-30685022
645
MDC1_HUMAN
-
0
0
-
-
2.40
ENST00000376406
40
ENSE00001707939
chr6:
30682955-30682817
139
MDC1_HUMAN
1-46
46
0
-
-
2.41i
ENST00000376406
41i
ENSE00002149164
chr6:
30681960-30681580
381
MDC1_HUMAN
46-173
128
0
-
-
2.41j
ENST00000376406
41j
ENSE00001677117
chr6:
30681494-30681425
70
MDC1_HUMAN
173-196
24
0
-
-
2.41n
ENST00000376406
41n
ENSE00001672479
chr6:
30681131-30679651
1481
MDC1_HUMAN
196-690
495
2
E:1-10
F:3-10
10
8
2.41v
ENST00000376406
41v
ENSE00001732269
chr6:
30679503-30679444
60
MDC1_HUMAN
690-710
21
0
-
-
2.42b
ENST00000376406
42b
ENSE00001773945
chr6:
30679281-30679189
93
MDC1_HUMAN
710-741
32
0
-
-
2.45j
ENST00000376406
45j
ENSE00001790042
chr6:
30676134-30675343
792
MDC1_HUMAN
741-1005
265
0
-
-
2.45q
ENST00000376406
45q
ENSE00001682597
chr6:
30675231-30675161
71
MDC1_HUMAN
1005-1028
24
0
-
-
2.47d
ENST00000376406
47d
ENSE00001757825
chr6:
30673875-30671398
2478
MDC1_HUMAN
1029-1854
826
0
-
-
2.47aq
ENST00000376406
47aq
ENSE00001680569
chr6:
30671314-30671195
120
MDC1_HUMAN
1855-1894
40
0
-
-
2.47au
ENST00000376406
47au
ENSE00001713998
chr6:
30671063-30670881
183
MDC1_HUMAN
1895-1955
61
0
-
-
2.47bg
ENST00000376406
47bg
ENSE00001800762
chr6:
30670654-30670529
126
MDC1_HUMAN
1956-1997
42
0
-
-
2.47bi
ENST00000376406
47bi
ENSE00001704145
chr6:
30670440-30670330
111
MDC1_HUMAN
1998-2034
37
0
-
-
2.51d
ENST00000376406
51d
ENSE00001891428
chr6:
30668409-30667584
826
MDC1_HUMAN
2035-2089
55
0
-
-
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