PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3UD1
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (62 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ZU5A-ZU5B DOMAINS OF HUMAN ERYTHROCYTE ANKYRIN
Authors
:
M. Yasunaga, J. J. Ipsaro, A. Mondragon
Date
:
27 Oct 11 (Deposition) - 22 Feb 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Beta Sandwich, Zu5, Adapter Protein, Spectrin Binding, Cytoskeleton, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yasunaga, J. J. Ipsaro, A. Mondragon
Structurally Similar But Functionally Diverse Zu5 Domains I Human Erythrocyte Ankyrin.
J. Mol. Biol. V. 417 336 2012
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: ETHANOL (EOHa)
1b: ETHANOL (EOHb)
1c: ETHANOL (EOHc)
1d: ETHANOL (EOHd)
1e: ETHANOL (EOHe)
1f: ETHANOL (EOHf)
1g: ETHANOL (EOHg)
1h: ETHANOL (EOHh)
1i: ETHANOL (EOHi)
1j: ETHANOL (EOHj)
1k: ETHANOL (EOHk)
1l: ETHANOL (EOHl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EOH
5
Ligand/Ion
ETHANOL
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:221 , PHE A:996 , SER A:998 , HOH C:109 , ASN C:932 , ARG C:974 , PRO C:994
BINDING SITE FOR RESIDUE EOH A 1
2
AC2
SOFTWARE
VAL A:1008
BINDING SITE FOR RESIDUE EOH A 4
3
AC3
SOFTWARE
EOH A:12 , EOH A:18 , HOH A:604 , LYS A:1018
BINDING SITE FOR RESIDUE EOH A 7
4
AC4
SOFTWARE
EOH A:7 , EOH A:18 , HOH A:128 , HOH A:311 , ARG A:1010 , SER A:1011 , GLU A:1012 , VAL A:1016 , LYS A:1018
BINDING SITE FOR RESIDUE EOH A 12
5
AC5
SOFTWARE
EOH A:7 , EOH A:12 , HOH A:128 , HOH A:604 , LYS A:1018 , GLN A:1031
BINDING SITE FOR RESIDUE EOH A 18
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_026411 (V991L, chain A, )
2: VAR_054992 (I1054T, chain A, )
3: VAR_048263 (I1075I, chain A, )
4: VAR_028770 (A1126P, chain A, )
5: VAR_028771 (T1192P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026411
V
991
L
ANK1_HUMAN
Polymorphism
---
A
V
991
L
2
UniProt
VAR_054992
I
1054
T
ANK1_HUMAN
Disease (SPH1)
---
A
I
1054
T
3
UniProt
VAR_048263
T
1075
I
ANK1_HUMAN
Polymorphism
35213384
A
I
1075
I
4
UniProt
VAR_028770
A
1126
P
ANK1_HUMAN
Polymorphism
504465
A
A
1126
P
5
UniProt
VAR_028771
T
1192
P
ANK1_HUMAN
Polymorphism
486770
A
T
1192
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZU5 (A:913-1068,A:1070-1216)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZU5
PS51145
ZU5 domain profile.
ANK1_HUMAN
913-1068
1070-1216
2
A:913-1068
-
-
A:1070-1216
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3UD1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help