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3UBQ
Asym. Unit
Info
Asym.Unit (508 KB)
Biol.Unit 1 (253 KB)
Biol.Unit 2 (254 KB)
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(1)
Title
:
INFLUENZA HEMAGGLUTININ FROM THE 2009 PANDEMIC IN COMPLEX WITH LIGAND 3SLN
Authors
:
R. Xu, I. A. Wilson
Date
:
24 Oct 11 (Deposition) - 23 Nov 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Viral Envelope Protein, Hemagglutinin, Viral Fusion Protein, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Xu, R. Mcbride, C. M. Nycholat, J. C. Paulson, I. A. Wilson
Structural Characterization Of The Hemagglutinin Receptor Specificity From The 2009 H1N1 Influenza Pandemic.
J. Virol. V. 86 982 2012
[
close entry info
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
19
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
3
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:73 , GLU A:75 , ASN A:94 , CYS A:97 , PRO A:140 , ARG A:224 , NAG A:331 , HOH A:463 , HOH A:591 , ASN G:133
BINDING SITE FOR RESIDUE NAG A 330
02
AC2
SOFTWARE
PRO A:140 , NAG A:330 , HOH A:1016 , ASN G:133 , LYS G:133A
BINDING SITE FOR RESIDUE NAG A 331
03
AC3
SOFTWARE
ASN A:278 , ASN A:289 , NAG E:332
BINDING SITE FOR RESIDUE NAG A 332
04
AC4
SOFTWARE
TYR C:98 , LYS C:133A , VAL C:135 , THR C:136 , ALA C:137 , LYS C:145 , TRP C:153 , HIS C:183 , LEU C:194 , GLN C:226 , GAL C:331 , HOH C:353 , HOH C:418 , HOH C:658
BINDING SITE FOR RESIDUE SIA C 330
05
AC5
SOFTWARE
GLN C:226 , SIA C:330 , NAG C:332
BINDING SITE FOR RESIDUE GAL C 331
06
AC6
SOFTWARE
GAL C:331
BINDING SITE FOR RESIDUE NAG C 332
07
AC7
SOFTWARE
GLU D:150 , ASN D:154 , THR D:156 , GLU K:77
BINDING SITE FOR RESIDUE NAG D 261
08
AC8
SOFTWARE
ASP A:276 , ASN E:94 , NAG E:332
BINDING SITE FOR RESIDUE NAG E 331
09
AC9
SOFTWARE
NAG A:332 , GLU C:238 , NAG E:331
BINDING SITE FOR RESIDUE NAG E 332
10
BC1
SOFTWARE
ASN E:278
BINDING SITE FOR RESIDUE NAG E 341
11
BC2
SOFTWARE
ASN G:21
BINDING SITE FOR RESIDUE NAG G 411
12
BC3
SOFTWARE
ASN G:73 , ASN G:94 , CYS G:97 , ARG G:224 , HOH G:611 , HOH G:1017
BINDING SITE FOR RESIDUE NAG G 431
13
BC4
SOFTWARE
ASN A:21 , LYS G:46 , ASN G:289
BINDING SITE FOR RESIDUE NAG G 451
14
BC5
SOFTWARE
TYR I:98 , LYS I:133A , VAL I:135 , THR I:136 , ALA I:137 , HIS I:183 , LEU I:194 , GLN I:226 , HOH I:358 , HOH I:361 , HOH I:419 , GAL I:502 , HOH I:978
BINDING SITE FOR RESIDUE SIA I 501
15
BC6
SOFTWARE
ASP I:190 , SIA I:501 , HOH I:978
BINDING SITE FOR RESIDUE GAL I 502
16
BC7
SOFTWARE
ASN I:33
BINDING SITE FOR RESIDUE NAG I 521
17
BC8
SOFTWARE
ASN I:73 , GLU I:75 , ASP I:93 , ASN I:94 , CYS I:97 , ARG I:224 , HOH I:461
BINDING SITE FOR RESIDUE NAG I 531
18
BC9
SOFTWARE
ASP I:276 , ASN I:278
BINDING SITE FOR RESIDUE NAG I 541
19
CC1
SOFTWARE
TYR K:98 , LYS K:133A , VAL K:135 , THR K:136 , ALA K:137 , LYS K:145 , HIS K:183 , LEU K:194 , GLN K:226 , HOH K:333 , HOH K:338 , GAL K:602
BINDING SITE FOR RESIDUE SIA K 601
20
CC2
SOFTWARE
SIA K:601
BINDING SITE FOR RESIDUE GAL K 602
21
CC3
SOFTWARE
ASN K:73 , GLU K:75 , ASP K:93 , ASN K:94 , CYS K:97 , PRO K:140 , ARG K:224 , NAG K:632
BINDING SITE FOR RESIDUE NAG K 631
22
CC4
SOFTWARE
NAG K:631 , HOH K:900
BINDING SITE FOR RESIDUE NAG K 632
23
CC5
SOFTWARE
PRO C:90A , ASP C:271 , ASN K:33
BINDING SITE FOR RESIDUE NAG K 621
24
CC6
SOFTWARE
ASN K:278 , THR K:280
BINDING SITE FOR RESIDUE NAG K 641
25
CC7
SOFTWARE
LYS K:46 , ASN K:289
BINDING SITE FOR RESIDUE NAG K 651
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3ubqa_ (A:)
1b: SCOP_d3ubqc_ (C:)
1c: SCOP_d3ubqe_ (E:)
1d: SCOP_d3ubqg_ (G:)
1e: SCOP_d3ubqi_ (I:)
1f: SCOP_d3ubqk_ (K:)
2a: SCOP_d3ubqb_ (B:)
2b: SCOP_d3ubqd_ (D:)
2c: SCOP_d3ubqf_ (F:)
2d: SCOP_d3ubqh_ (H:)
2e: SCOP_d3ubqj_ (J:)
2f: SCOP_d3ubql_ (L:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d3ubqa_
A:
1b
d3ubqc_
C:
1c
d3ubqe_
E:
1d
d3ubqg_
G:
1e
d3ubqi_
I:
1f
d3ubqk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza A virus [TaxId: 641501]
(7)
2a
d3ubqb_
B:
2b
d3ubqd_
D:
2c
d3ubqf_
F:
2d
d3ubqh_
H:
2e
d3ubqj_
J:
2f
d3ubql_
L:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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