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3UBN
Asym. Unit
Info
Asym.Unit (500 KB)
Biol.Unit 1 (250 KB)
Biol.Unit 2 (248 KB)
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(1)
Title
:
INFLUENZA HEMAGGLUTININ FROM THE 2009 PANDEMIC IN COMPLEX WITH LIGAND 6SLN
Authors
:
R. Xu, I. A. Wilson
Date
:
24 Oct 11 (Deposition) - 23 Nov 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Viral Envelope Protein, Hemagglutinin, Viral Fusion Protein, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Xu, R. Mcbride, C. M. Nycholat, J. C. Paulson, I. A. Wilson
Structural Characterization Of The Hemagglutinin Receptor Specificity From The 2009 H1N1 Influenza Pandemic.
J. Virol. V. 86 982 2012
[
close entry info
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
6
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:98 , LYS A:133A , VAL A:135 , THR A:136 , ALA A:137 , LYS A:145 , TRP A:153 , HIS A:183 , LEU A:194 , GLN A:226 , GAL A:331 , NAG A:332 , HOH A:362 , HOH A:475 , HOH A:476
BINDING SITE FOR RESIDUE SIA A 330
02
AC2
SOFTWARE
LYS A:222 , ASP A:225 , SIA A:330 , NAG A:332 , HOH A:485
BINDING SITE FOR RESIDUE GAL A 331
03
AC3
SOFTWARE
ASP A:190 , SIA A:330 , GAL A:331
BINDING SITE FOR RESIDUE NAG A 332
04
AC4
SOFTWARE
TYR C:98 , LYS C:133A , VAL C:135 , THR C:136 , ALA C:137 , LYS C:145 , TRP C:153 , HIS C:183 , LEU C:194 , GLN C:226 , GAL C:331 , NAG C:332 , HOH C:337 , HOH C:342 , HOH C:477 , HOH C:479
BINDING SITE FOR RESIDUE SIA C 330
05
AC5
SOFTWARE
LYS C:222 , ASP C:225 , SIA C:330 , NAG C:332
BINDING SITE FOR RESIDUE GAL C 331
06
AC6
SOFTWARE
ASP C:190 , SER C:193 , SIA C:330 , GAL C:331
BINDING SITE FOR RESIDUE NAG C 332
07
AC7
SOFTWARE
TYR E:98 , LYS E:133A , VAL E:135 , THR E:136 , ALA E:137 , LYS E:145 , TRP E:153 , HIS E:183 , LEU E:194 , GLN E:226 , GAL E:331 , NAG E:332 , HOH E:336 , HOH E:396 , HOH E:480
BINDING SITE FOR RESIDUE SIA E 330
08
AC8
SOFTWARE
LYS E:222 , ASP E:225 , GLN E:226 , SIA E:330 , NAG E:332 , HOH E:481
BINDING SITE FOR RESIDUE GAL E 331
09
AC9
SOFTWARE
ASP E:190 , SER E:193 , SIA E:330 , GAL E:331
BINDING SITE FOR RESIDUE NAG E 332
10
BC1
SOFTWARE
TYR G:98 , LYS G:133A , VAL G:135 , THR G:136 , ALA G:137 , LYS G:145 , TRP G:153 , HIS G:183 , LEU G:194 , GLN G:226 , HOH G:343 , GAL G:402 , HOH G:422 , HOH G:483
BINDING SITE FOR RESIDUE SIA G 401
11
BC2
SOFTWARE
ASP B:145 , LYS G:222 , ASP G:225 , GLN G:226 , SIA G:401
BINDING SITE FOR RESIDUE GAL G 402
12
BC3
SOFTWARE
TYR I:98 , LYS I:133A , GLY I:134 , VAL I:135 , THR I:136 , ALA I:137 , LYS I:145 , TRP I:153 , HIS I:183 , LEU I:194 , GLN I:226 , HOH I:337 , HOH I:361 , GAL I:502 , NAG I:503
BINDING SITE FOR RESIDUE SIA I 501
13
BC4
SOFTWARE
LYS I:222 , ASP I:225 , SIA I:501 , NAG I:503
BINDING SITE FOR RESIDUE GAL I 502
14
BC5
SOFTWARE
ASP I:190 , SIA I:501 , GAL I:502
BINDING SITE FOR RESIDUE NAG I 503
15
BC6
SOFTWARE
TYR K:98 , LYS K:133A , VAL K:135 , THR K:136 , ALA K:137 , LYS K:145 , TRP K:153 , HIS K:183 , LEU K:194 , GLN K:226 , HOH K:333 , GAL K:602 , NAG K:603
BINDING SITE FOR RESIDUE SIA K 601
16
BC7
SOFTWARE
GLU G:77 , THR G:81 , LYS K:222 , ASP K:225 , SIA K:601 , NAG K:603
BINDING SITE FOR RESIDUE GAL K 602
17
BC8
SOFTWARE
GLU G:77 , ASP K:190 , SIA K:601 , GAL K:602
BINDING SITE FOR RESIDUE NAG K 603
18
BC9
SOFTWARE
ASN A:21
BINDING SITE FOR RESIDUE NAG A 333
19
CC1
SOFTWARE
ASN A:33 , ASP C:276
BINDING SITE FOR RESIDUE NAG A 334
20
CC2
SOFTWARE
ASN A:73 , GLU A:75 , ASN A:94 , CYS A:97 , ARG A:224 , HOH A:461
BINDING SITE FOR RESIDUE NAG A 335
21
CC3
SOFTWARE
GLY A:55A , ASN A:278 , THR A:280 , THR G:23 , ASP G:24
BINDING SITE FOR RESIDUE NAG A 336
22
CC4
SOFTWARE
ASN C:73 , GLU C:75 , ASP C:93 , ASN C:94 , CYS C:97 , PRO C:140 , ARG C:224 , HOH C:355
BINDING SITE FOR RESIDUE NAG C 333
23
CC5
SOFTWARE
ASP C:276 , ASN C:278
BINDING SITE FOR RESIDUE NAG C 334
24
CC6
SOFTWARE
GLU E:77 , ASN J:154 , THR J:156
BINDING SITE FOR RESIDUE NAG J 561
25
CC7
SOFTWARE
ASN E:73 , GLU E:75 , ASP E:93 , ASN E:94 , PRO E:140 , ARG E:224
BINDING SITE FOR RESIDUE NAG E 333
26
CC8
SOFTWARE
ASN A:133 , ASN G:73 , GLU G:75 , ASP G:93 , ASN G:94 , CYS G:97 , PRO G:140 , ARG G:224 , NAG G:432
BINDING SITE FOR RESIDUE NAG G 431
27
CC9
SOFTWARE
ASN A:133 , LYS A:133A , PRO G:140 , NAG G:431
BINDING SITE FOR RESIDUE NAG G 432
28
DC1
SOFTWARE
GLY K:55A , ASN K:278 , HOH K:446
BINDING SITE FOR RESIDUE NAG K 641
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3ubna_ (A:)
1b: SCOP_d3ubnc_ (C:)
1c: SCOP_d3ubne_ (E:)
1d: SCOP_d3ubng_ (G:)
1e: SCOP_d3ubni_ (I:)
1f: SCOP_d3ubnk_ (K:)
2a: SCOP_d3ubnb_ (B:)
2b: SCOP_d3ubnd_ (D:)
2c: SCOP_d3ubnf_ (F:)
2d: SCOP_d3ubnh_ (H:)
2e: SCOP_d3ubnj_ (J:)
2f: SCOP_d3ubnl_ (L:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d3ubna_
A:
1b
d3ubnc_
C:
1c
d3ubne_
E:
1d
d3ubng_
G:
1e
d3ubni_
I:
1f
d3ubnk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza A virus [TaxId: 641501]
(7)
2a
d3ubnb_
B:
2b
d3ubnd_
D:
2c
d3ubnf_
F:
2d
d3ubnh_
H:
2e
d3ubnj_
J:
2f
d3ubnl_
L:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Protein & NOT Site
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Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
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