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3UAN
Biol. Unit 2
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Asym.Unit (197 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3-O-SULFOTRANSFERASE (3-OST-1) WITH BOUND PAP AND HEPTASACCHARIDE SUBSTRATE
Authors
:
A. F. Moon, Y. Xu, S. M. Woody, J. M. Krahn, R. J. Linhardt, J. Liu, L. C. Ped
Date
:
21 Oct 11 (Deposition) - 04 Apr 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sulfotransferase, Heparan Sulfate, Alpha/Beta Motif, Co-Factor Paps/Pap, Heparan Sulfate Oligosaccharides, Golgi-Localized, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Moon, Y. Xu, S. M. Woody, J. M. Krahn, R. J. Linhardt, J. Liu, L. C. Pedersen
Dissecting The Substrate Recognition Of 3-O-Sulfotransferas For The Biosynthesis Of Anticoagulant Heparin.
Proc. Natl. Acad. Sci. Usa V. 109 5265 2012
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
2a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2c: BETA-D-GLUCOPYRANURONIC ACID (BDPc)
2d: BETA-D-GLUCOPYRANURONIC ACID (BDPd)
3a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
3b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
4a: 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-... (NGYa)
4b: 2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-... (NGYb)
5a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
5b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
5c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
5d: N,O6-DISULFO-GLUCOSAMINE (SGNd)
View:
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No.
Name
Count
Type
Full Name
1
A3P
1
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
3
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
4
NGY
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-6-O-SULFO-ALPHA-D-GLUCOPYRANOSE
5
SGN
2
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC4 (SOFTWARE)
7: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HOH B:21 , HOH B:28 , HOH B:33 , LYS B:68 , GLY B:69 , GLY B:70 , THR B:71 , ARG B:72 , ALA B:73 , ARG B:151 , SER B:159 , ILE B:225 , PHE B:258 , TYR B:259 , LEU B:270 , LYS B:274 , GLY B:275 , ARG B:276 , HIS B:278 , HOH B:321 , HOH B:324 , HOH B:335 , HOH B:382
BINDING SITE FOR RESIDUE A3P B 603
2
AC9
SOFTWARE
BDP B:2 , ARG B:72 , GLU B:76 , LEU B:270 , HIS B:271
BINDING SITE FOR RESIDUE NGY B 1
3
BC1
SOFTWARE
NGY B:1 , SGN B:3 , ARG B:72 , GLU B:90 , LYS B:123 , SER B:273 , LYS B:274
BINDING SITE FOR RESIDUE BDP B 2
4
BC2
SOFTWARE
BDP B:2 , IDS B:4 , HOH B:33 , ARG B:67 , GLU B:90 , HIS B:92 , PRO B:125 , ALA B:126 , HOH B:383 , HOH B:384
BINDING SITE FOR RESIDUE SGN B 3
5
BC3
SOFTWARE
SGN B:3 , SGN B:5 , ARG B:67 , GLN B:163 , ASN B:167 , ARG B:197 , HOH B:383
BINDING SITE FOR RESIDUE IDS B 4
6
BC4
SOFTWARE
IDS B:4 , BDP B:6 , ASN B:167 , HIS B:168 , ARG B:197 , HOH B:348 , HOH B:353 , HOH B:361
BINDING SITE FOR RESIDUE SGN B 5
7
BC5
SOFTWARE
SGN B:5
BINDING SITE FOR RESIDUE BDP B 6
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3uana_ (A:)
1b: SCOP_d3uanb_ (B:)
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
PAPS sulfotransferase
(54)
Protein domain
:
automated matches
(23)
Mouse (Mus musculus) [TaxId: 10090]
(8)
1a
d3uana_
A:
1b
d3uanb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (197 KB)
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