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3U94
Biol. Unit 1
Info
Asym.Unit (523 KB)
Biol.Unit 1 (512 KB)
Biol.Unit 2 (132 KB)
Biol.Unit 3 (131 KB)
Biol.Unit 4 (131 KB)
Biol.Unit 5 (131 KB)
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Title
:
CRYSTAL STRUCTURE OF THE GLUK3 LIGAND BINDING DOMAIN COMPLEX WITH GLUTAMATE AND ZINC: P21212 FORM
Authors
:
J. Kumar, M. L. Mayer
Date
:
17 Oct 11 (Deposition) - 26 Sep 12 (Release) - 19 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Biol. Unit 5: D (1x)
Keywords
:
Ion Channel, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Veran, J. Kumar, P. S. Pinheiro, A. Athane, M. L. Mayer, D. Perrais, C. Mulle
Zinc Potentiates Gluk3 Glutamate Receptor Function By Stabilizing The Ligand Binding Domain Dimer Interface.
Neuron V. 76 565 2012
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GLU
4
Mod. Amino Acid
GLUTAMIC ACID
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:88 , LEU A:89 , THR A:90 , ARG A:95 , GLY A:140 , ALA A:141 , THR A:142 , GLU A:189 , TYR A:215 , HOH A:265 , HOH A:290 , HOH A:291 , HOH A:302
BINDING SITE FOR RESIDUE GLU A 258
02
AC2
SOFTWARE
TYR B:61 , PRO B:88 , LEU B:89 , THR B:90 , ARG B:95 , GLY B:140 , ALA B:141 , THR B:142 , GLU B:189 , HOH B:281 , HOH B:283 , HOH B:300 , HOH B:330
BINDING SITE FOR RESIDUE GLU B 258
03
AC3
SOFTWARE
TYR C:61 , PRO C:88 , THR C:90 , ARG C:95 , GLY C:140 , ALA C:141 , THR C:142 , GLU C:189 , HOH C:268 , HOH C:271 , HOH C:296 , HOH C:324
BINDING SITE FOR RESIDUE GLU C 258
04
AC4
SOFTWARE
TYR D:61 , PRO D:88 , THR D:90 , ARG D:95 , GLY D:140 , ALA D:141 , THR D:142 , GLU D:189 , HOH D:273 , HOH D:274 , HOH D:278 , HOH D:292
BINDING SITE FOR RESIDUE GLU D 258
05
AC5
SOFTWARE
HIS A:243 , GLU A:247 , GLU B:194
BINDING SITE FOR RESIDUE ZN A 259
06
AC6
SOFTWARE
GLU A:194 , LYS A:246 , HIS B:243 , GLU B:247 , HOH B:297
BINDING SITE FOR RESIDUE ZN B 259
07
AC7
SOFTWARE
HIS B:93 , GLU B:96 , ASP C:240 , HIS C:243
BINDING SITE FOR RESIDUE ZN C 259
08
AC8
SOFTWARE
HIS A:93 , GLU A:96 , ASP D:240 , HIS D:243
BINDING SITE FOR RESIDUE ZN D 259
09
AC9
SOFTWARE
GLU B:238 , GLU D:238 , HOH D:650
BINDING SITE FOR RESIDUE ZN D 260
10
BC1
SOFTWARE
HIS A:80 , HIS C:93
BINDING SITE FOR RESIDUE ZN A 260
11
BC2
SOFTWARE
HIS A:45 , HOH A:688 , HOH A:689
BINDING SITE FOR RESIDUE ZN A 261
12
BC3
SOFTWARE
GLU A:238 , GLU C:238
BINDING SITE FOR RESIDUE ZN C 260
13
BC4
SOFTWARE
HIS B:80 , HOH B:298 , HOH B:651 , HIS D:93 , LYS D:97
BINDING SITE FOR RESIDUE ZN B 260
14
BC5
SOFTWARE
GLU C:42 , LYS C:241 , HOH C:652 , HIS D:45
BINDING SITE FOR RESIDUE ZN C 261
15
BC6
SOFTWARE
HIS C:45 , HOH C:653 , GLU D:42 , LYS D:241
BINDING SITE FOR RESIDUE ZN D 261
16
BC7
SOFTWARE
HIS C:80
BINDING SITE FOR RESIDUE ZN C 262
17
BC8
SOFTWARE
HIS D:80 , HOH D:681
BINDING SITE FOR RESIDUE ZN D 262
18
BC9
SOFTWARE
ARG D:20 , ARG D:24
BINDING SITE FOR RESIDUE CL D 263
19
CC1
SOFTWARE
HIS B:45 , HOH B:630
BINDING SITE FOR RESIDUE SO4 B 261
20
CC2
SOFTWARE
ARG C:20 , SER C:22
BINDING SITE FOR RESIDUE SO4 C 263
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3u94a_ (A:)
1b: SCOP_d3u94b_ (B:)
1c: SCOP_d3u94c_ (C:)
1d: SCOP_d3u94d_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d3u94a_
A:
1b
d3u94b_
B:
1c
d3u94c_
C:
1d
d3u94d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (523 KB)
Header - Asym.Unit
Biol.Unit 1 (512 KB)
Header - Biol.Unit 1
Biol.Unit 2 (132 KB)
Header - Biol.Unit 2
Biol.Unit 3 (131 KB)
Header - Biol.Unit 3
Biol.Unit 4 (131 KB)
Header - Biol.Unit 4
Biol.Unit 5 (131 KB)
Header - Biol.Unit 5
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