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3U93
Asym. Unit
Info
Asym.Unit (261 KB)
Biol.Unit 1 (505 KB)
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Title
:
CRYSTAL STRUCTURE OF THE GLUK3 LIGAND BINDING DOMAIN COMPLEX WITH GLUTAMATE AND ZINC: P2221 FORM
Authors
:
J. Kumar, M. L. Mayer
Date
:
17 Oct 11 (Deposition) - 26 Sep 12 (Release) - 12 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Membrane Protein, Ion Channel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Veran, J. Kumar, P. S. Pinheiro, A. Athane, M. L. Mayer, D. Perrais, C. Mulle
Zinc Potentiates Gluk3 Glutamate Receptor Function By Stabilizing The Ligand Binding Domain Dimer Interface.
Neuron V. 76 565 2012
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
View:
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No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
3
ZN
5
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:61 , PRO A:88 , LEU A:89 , THR A:90 , ARG A:95 , GLY A:140 , ALA A:141 , THR A:142 , GLU A:189 , HOH A:271 , HOH A:276 , HOH A:322 , HOH A:324
BINDING SITE FOR RESIDUE GLU A 258
2
AC2
SOFTWARE
GLU A:194 , HIS A:243 , LYS A:246 , GLU A:247
BINDING SITE FOR RESIDUE ZN A 259
3
AC3
SOFTWARE
TYR B:61 , PRO B:88 , LEU B:89 , THR B:90 , ARG B:95 , GLY B:140 , ALA B:141 , THR B:142 , GLU B:189 , HOH B:267 , HOH B:283 , HOH B:296 , HOH B:317
BINDING SITE FOR RESIDUE GLU B 258
4
AC4
SOFTWARE
HIS A:93 , GLU A:96 , ASP B:240 , HIS B:243
BINDING SITE FOR RESIDUE ZN B 259
5
AC5
SOFTWARE
HIS A:80 , HIS B:93 , LYS B:97
BINDING SITE FOR RESIDUE ZN B 260
6
AC6
SOFTWARE
GLU B:42 , HIS B:45 , LYS B:241 , HOH B:362
BINDING SITE FOR RESIDUE ZN B 261
7
AC7
SOFTWARE
HIS B:80
BINDING SITE FOR RESIDUE ZN B 262
8
AC8
SOFTWARE
ARG B:31 , LEU B:55
BINDING SITE FOR RESIDUE CL B 263
9
AC9
SOFTWARE
ARG B:24
BINDING SITE FOR RESIDUE CL B 264
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3u93a_ (A:)
1b: SCOP_d3u93b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d3u93a_
A:
1b
d3u93b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (261 KB)
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