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3U90
Biol. Unit 1
Info
Asym.Unit (40 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (742 KB)
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(1)
Title
:
APOFERRITIN: COMPLEX WITH SDS
Authors
:
R. Liu, W. Bu, J. Xi, S. R. Mortazavi, J. C. Cheung-Lau, I. J. Dmochowski,
Date
:
17 Oct 11 (Deposition) - 25 Apr 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (24x)
Keywords
:
Four Helix Bundle, Iron-Binding Protein, Intracellular Protein, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Liu, W. Bu, J. Xi, S. R. Mortazavi, J. C. Cheung-Lau, I. J. Dmochowski P. J. Loll
Beyond The Detergent Effect: A Binding Site For Sodium Dodecyl Sulfate (Sds) In Mammalian Apoferritin.
Acta Crystallogr. , Sect. D V. 68 497 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
2a: DODECYL SULFATE (SDSa)
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Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
SDS
1
Ligand/Ion
DODECYL SULFATE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:27 , ALA A:55 , GLU A:56 , ARG A:59 , GLU A:63
BINDING SITE FOR RESIDUE SDS A 175
02
AC2
SOFTWARE
ASP A:80 , HOH A:199
BINDING SITE FOR RESIDUE CD A 176
03
AC3
SOFTWARE
CYS A:126 , GLU A:130 , CD A:183 , HOH A:308
BINDING SITE FOR RESIDUE CD A 177
04
AC4
SOFTWARE
GLU A:56 , GLU A:57 , GLU A:60
BINDING SITE FOR RESIDUE CD A 178
05
AC5
SOFTWARE
THR A:10 , GLU A:11 , HOH A:242 , HOH A:275
BINDING SITE FOR RESIDUE CD A 179
06
AC6
SOFTWARE
GLU A:53 , GLU A:56
BINDING SITE FOR RESIDUE CD A 180
07
AC7
SOFTWARE
GLU A:88
BINDING SITE FOR RESIDUE CD A 181
08
AC8
SOFTWARE
ASP A:38 , CYS A:48
BINDING SITE FOR RESIDUE CD A 182
09
AC9
SOFTWARE
HIS A:114 , CYS A:126 , CD A:177
BINDING SITE FOR RESIDUE CD A 183
10
BC1
SOFTWARE
HIS A:132 , ASP A:135
BINDING SITE FOR RESIDUE CD A 184
11
BC2
SOFTWARE
HIS A:49
BINDING SITE FOR RESIDUE CD A 185
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-155)
2: FERRITIN_1 (A:57-75)
3: FERRITIN_2 (A:122-142)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
1
A:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
1
A:57-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
1
A:122-142
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3u90a_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Horse (Equus caballus), L chain [TaxId: 9796]
(46)
1a
d3u90a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (40 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (742 KB)
Header - Biol.Unit 2
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