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3U8H
Biol. Unit 3
Info
Asym.Unit (93 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (86 KB)
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(1)
Title
:
FUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOSPHOLIPASE A2 REVEALS A ROLE FOR VIMENTIN IN REGULATING ARACHIDONIC ACID METABOLISM
Authors
:
L. K. Lee, K. J. Bryant, R. Bouveret, P. -W. Lei, A. P. Duff, S. J. Harrop, E R. P. Harvey, M. H. Gelb, P. P. Gray, P. M. Curmi, A. M. Cunningham, W. B. C K. F. Scott
Date
:
17 Oct 11 (Deposition) - 17 Oct 12 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Secreted Phospholipase A2, Phospholipase A2 Activity, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. K. Lee, K. J. Bryant, R. Bouveret, P. W. Lei, A. P. Duff, S. J. Harrop, E. P. Huang, R. P. Harvey, M. H. Gelb, P. P. Gray, P. M. Curmi, A. M. Cunningham, W. B. Church, K. F. Scott
Selective Inhibition Of Human Group Iia-Secreted Phospholipase A2 (Hgiia) Signaling Reveals Arachidonic Acid Metabolism Is Associated With Colocalization Of Hgiia To Vimentin In Rheumatoid Synoviocytes.
J. Biol. Chem. V. 288 15269 2013
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (S)-5-(4-BENZYLOXY-PHENYL)-4-(7-PH... (BHPa)
1b: (S)-5-(4-BENZYLOXY-PHENYL)-4-(7-PH... (BHPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
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No.
Name
Count
Type
Full Name
1
BHP
2
Ligand/Ion
(S)-5-(4-BENZYLOXY-PHENYL)-4-(7-PHENYL-HEPTANOYLAMINO)-PENTANOIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:2 , HIS A:6 , ALA A:17 , TYR A:21 , GLY A:22 , HIS A:27 , GLY A:29 , VAL A:30 , GLY A:31 , HIS A:47 , ASP A:48 , TYR A:51 , CA A:127 , PHE B:23 , VAL B:30 , BHP B:125
BINDING SITE FOR RESIDUE BHP A 125
02
AC2
SOFTWARE
PHE A:23 , GLY A:25 , TYR A:112 , ASN A:114 , HOH A:136 , HOH A:152
BINDING SITE FOR RESIDUE CA A 126
03
AC3
SOFTWARE
HIS A:27 , GLY A:29 , GLY A:31 , ASP A:48 , BHP A:125
BINDING SITE FOR RESIDUE CA A 127
04
AC4
SOFTWARE
ASN A:4 , ARG A:7 , ARG B:118
BINDING SITE FOR RESIDUE CL A 128
05
AC5
SOFTWARE
PHE A:63 , SER A:65 , ARG A:84 , LYS B:108
BINDING SITE FOR RESIDUE CL A 129
06
AC6
SOFTWARE
ALA A:18 , PHE A:23 , BHP A:125 , PHE B:5 , ALA B:17 , HIS B:27 , CYS B:28 , GLY B:29 , GLY B:31 , HIS B:47 , ASP B:48 , CA B:127
BINDING SITE FOR RESIDUE BHP B 125
07
AC7
SOFTWARE
PHE B:23 , GLY B:25 , TYR B:112 , ASN B:114 , HOH B:135 , HOH B:160
BINDING SITE FOR RESIDUE CA B 126
08
AC8
SOFTWARE
HIS B:27 , GLY B:29 , GLY B:31 , ASP B:48 , BHP B:125
BINDING SITE FOR RESIDUE CA B 127
09
AC9
SOFTWARE
ARG A:118 , ASN B:4 , ARG B:7
BINDING SITE FOR RESIDUE CL B 128
10
BC1
SOFTWARE
LYS A:108 , PHE B:63 , SER B:65 , ARG B:84
BINDING SITE FOR RESIDUE CL B 129
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:43-50,B:43-50)
2: PA2_ASP (A:87-97,B:87-97)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2GA_HUMAN
63-70
2
A:43-50
B:43-50
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2GA_HUMAN
107-117
2
A:87-97
B:87-97
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3u8ha_ (A:)
1b: SCOP_d3u8hb_ (B:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Phospholipase A2
(72)
Human (Homo sapiens), synovial fluid [TaxId: 9606]
(16)
1a
d3u8ha_
A:
1b
d3u8hb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (93 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
Header - Biol.Unit 2
Biol.Unit 3 (86 KB)
Header - Biol.Unit 3
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