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3U8D
Biol. Unit 1
Info
Asym.Unit (91 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
FUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOSPHOLIPASE A2 REVEALS A ROLE FOR VIMENTIN IN REGULATING ARACHIDONIC ACID METABOLISM
Authors
:
L. K. Lee, K. J. Bryant, R. Bouveret, P. -W. Lei, A. P. Duff, S. J. Harrop, E R. P. Harvey, M. H. Gelb, P. P. Gray, P. M. Curmi, A. M. Cunningham, W. B. C K. F. Scott
Date
:
16 Oct 11 (Deposition) - 17 Oct 12 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Secreted Phospholipase A2, Phospholipase A2 Activity, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. K. Lee, K. J. Bryant, R. Bouveret, P. W. Lei, A. P. Duff, S. J. Harrop, E. P. Huang, R. P. Harvey, M. H. Gelb, P. P. Gray, P. M. Curmi, A. M. Cunningham, W. B. Church, K. F. Scott
Selective Inhibition Of Human Group Iia-Secreted Phospholipase A2 (Hgiia) Signaling Reveals Arachidonic Acid Metabolism Is Associated With Colocalization Of Hgiia To Vimentin In Rheumatoid Synoviocytes.
J. Biol. Chem. V. 288 15269 2013
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: (3-{[3-(2-AMINO-2-OXOETHYL)-1-BENZ... (U8Da)
3b: (3-{[3-(2-AMINO-2-OXOETHYL)-1-BENZ... (U8Db)
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
U8D
1
Ligand/Ion
(3-{[3-(2-AMINO-2-OXOETHYL)-1-BENZYL-2-ETHYL-1H-INDOL-5-YL]OXY}PROPYL)PHOSPHONIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:2 , HIS A:6 , ILE A:9 , TYR A:21 , GLY A:22 , HIS A:27 , CYS A:28 , GLY A:29 , GLY A:31 , HIS A:47 , ASP A:48 , LYS A:62 , PHE A:98 , CA A:202 , HOH A:306 , HOH A:328 , HOH A:348 , HOH A:376 , HOH A:395 , LEU B:19
BINDING SITE FOR RESIDUE U8D A 201
2
AC2
SOFTWARE
HIS A:27 , GLY A:29 , GLY A:31 , ASP A:48 , U8D A:201
BINDING SITE FOR RESIDUE CA A 202
3
AC3
SOFTWARE
PHE A:23 , GLY A:25 , TYR A:112 , ASN A:114 , HOH A:307 , HOH A:310
BINDING SITE FOR RESIDUE CA A 203
4
AC4
SOFTWARE
PHE A:63 , SER A:65 , ARG A:84 , LYS A:108
BINDING SITE FOR RESIDUE CL A 204
5
AC5
SOFTWARE
ILE A:75 , LYS A:92
BINDING SITE FOR RESIDUE CL A 205
6
AC6
SOFTWARE
LEU A:19 , HOH A:329 , LEU B:2 , HIS B:6 , ILE B:9 , TYR B:21 , GLY B:22 , HIS B:27 , CYS B:28 , GLY B:29 , GLY B:31 , HIS B:47 , ASP B:48 , TYR B:51 , LYS B:62 , CA B:202 , HOH B:305 , HOH B:321 , HOH B:351 , HOH B:394
BINDING SITE FOR RESIDUE U8D B 201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:43-50)
2: PA2_ASP (A:87-97)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2GA_HUMAN
63-70
1
A:43-50
-
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2GA_HUMAN
107-117
1
A:87-97
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3u8da_ (A:)
1b: SCOP_d3u8db_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Phospholipase A2
(72)
Human (Homo sapiens), synovial fluid [TaxId: 9606]
(16)
1a
d3u8da_
A:
1b
d3u8db_
B:
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (91 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
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