PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3U81
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (123 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A SAH-BOUND SEMI-HOLO FORM OF RAT CATECHOL-O-METHYLTRANSFERASE
Authors
:
A. Ehler, D. Schlatter, M. Stihle, J. Benz, M. G. Rudolph
Date
:
15 Oct 11 (Deposition) - 01 Feb 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.13
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Methyltransferase, Neurotransmitter Degradation, Transferase- Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ellermann, C. Lerner, G. Burgy, A. Ehler, C. Bissantz, R. Jakob-Roetne, R. Paulini, O. Allemann, H. Tissot, D. Grunstein, M. Stihle, F. Diederich, M. G. Rudolph
Catechol-O-Methyltransferase In Complex With Substituted 3'-Deoxyribose Bisubstrate Inhibitors.
Acta Crystallogr. , Sect. D V. 68 253 2012
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
1
Ligand/Ion
POTASSIUM ION
2
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:46 , GLY A:66 , ALA A:67 , TYR A:68 , TYR A:71 , SER A:72 , GLU A:90 , ILE A:91 , GLY A:117 , ALA A:118 , SER A:119 , GLN A:120 , ASP A:141 , HIS A:142 , TRP A:143 , HOH A:244 , HOH A:283 , HOH A:350 , HOH A:468 , HOH A:507 , HOH A:531
BINDING SITE FOR RESIDUE SAH A 222
2
AC2
SOFTWARE
VAL A:183 , ARG A:184 , SER A:186 , PHE A:189 , HOH A:371 , HOH A:503
BINDING SITE FOR RESIDUE K A 223
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SAM_OMT_I (A:2-213)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_OMT_I
PS51682
SAM-dependent O-methyltransferase class I-type profile.
COMT_RAT
45-256
1
A:2-213
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:2-47)
Exon 1.3 (A:47-111)
Exon 1.4 (A:112-155)
Exon 1.5 (A:156-219)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000050269
1
ENSRNOE00000455167
chr11:
84561591-84561757
167
COMT_RAT
-
0
0
-
-
1.2
ENSRNOT00000050269
2
ENSRNOE00000018229
chr11:
84576767-84577034
268
COMT_RAT
1-90
90
1
A:2-47
46
1.3
ENSRNOT00000050269
3
ENSRNOE00000018230
chr11:
84577399-84577592
194
COMT_RAT
90-154
65
1
A:47-111
65
1.4
ENSRNOT00000050269
4
ENSRNOE00000018231
chr11:
84577902-84578033
132
COMT_RAT
155-198
44
1
A:112-155
44
1.5
ENSRNOT00000050269
5
ENSRNOE00000317236
chr11:
84580831-84581705
875
COMT_RAT
199-264
66
1
A:156-219
64
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3u81a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
COMT-like
(31)
Protein domain
:
automated matches
(25)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(20)
1a
d3u81a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3U81
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help