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3U7Q
Asym. Unit
Info
Asym.Unit (751 KB)
Biol.Unit 1 (739 KB)
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(1)
Title
:
A. VINELANDII NITROGENASE MOFE PROTEIN AT ATOMIC RESOLUTION
Authors
:
T. Spatzal, O. Einsle
Date
:
14 Oct 11 (Deposition) - 07 Dec 11 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Multiple Rossmann Fold Domains, Reductase, Nitrogen Fixing, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Spatzal, M. Aksoyoglu, L. Zhang, S. L. Andrade, E. Schleicher, S. Weber, D. C. Rees, O. Einsle
Evidence For Interstitial Carbon In Nitrogenase Femo Cofactor.
Science V. 334 940 2011
[
close entry info
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Hetero Components
(7, 20)
Info
All Hetero Components
1a: FE(8)-S(7) CLUSTER, OXIDIZED (1CLa)
1b: FE(8)-S(7) CLUSTER, OXIDIZED (1CLb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: FE(8)-S(7) CLUSTER (CLFa)
3b: FE(8)-S(7) CLUSTER (CLFb)
4a: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAa)
4b: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAb)
5a: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSa)
5b: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSb)
6a: IMIDAZOLE (IMDa)
6b: IMIDAZOLE (IMDb)
6c: IMIDAZOLE (IMDc)
6d: IMIDAZOLE (IMDd)
6e: IMIDAZOLE (IMDe)
6f: IMIDAZOLE (IMDf)
6g: IMIDAZOLE (IMDg)
6h: IMIDAZOLE (IMDh)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1CL
2
Ligand/Ion
FE(8)-S(7) CLUSTER, OXIDIZED
2
CA
2
Ligand/Ion
CALCIUM ION
3
CLF
2
Ligand/Ion
FE(8)-S(7) CLUSTER
4
HCA
2
Ligand/Ion
3-HYDROXY-3-CARBOXY-ADIPIC ACID
5
ICS
2
Ligand/Ion
IRON-SULFUR-MOLYBDENUM CLUSTER WITH INTERSTITIAL CARBON
6
IMD
8
Ligand/Ion
IMIDAZOLE
7
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , HOH A:519 , HOH A:525 , HOH A:534 , HOH A:536 , HOH A:538 , HOH A:561 , HOH A:573 , HOH A:585 , ICS A:6496 , HOH B:592 , HOH B:674
BINDING SITE FOR RESIDUE HCA A 6494
02
AC2
SOFTWARE
VAL A:70 , ARG A:96 , HIS A:195 , TYR A:229 , CYS A:275 , GLY A:356 , GLY A:357 , ARG A:359 , PHE A:381 , HIS A:442 , HCA A:6494
BINDING SITE FOR RESIDUE ICS A 6496
03
AC3
SOFTWARE
TRP A:294 , HOH A:495 , HOH A:2352
BINDING SITE FOR RESIDUE IMD A 493
04
AC4
SOFTWARE
ARG A:96 , TYR A:99 , THR A:111 , HOH D:552 , HOH D:698 , HOH D:878
BINDING SITE FOR RESIDUE IMD A 494
05
AC5
SOFTWARE
ASP B:353 , ASP B:357 , HOH B:608 , ARG D:108 , GLU D:109 , HOH D:628 , HOH D:1263
BINDING SITE FOR RESIDUE CA B 7492
06
AC6
SOFTWARE
CYS A:62 , TYR A:64 , PRO A:85 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188
BINDING SITE FOR RESIDUE 1CL B 6498
07
AC7
SOFTWARE
CYS A:62 , TYR A:64 , PRO A:85 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188
BINDING SITE FOR RESIDUE CLF B 6499
08
AC8
SOFTWARE
ARG B:108 , GLU B:109 , HOH B:627 , ASP D:353 , ASP D:357 , HOH D:711 , HOH D:2575
BINDING SITE FOR RESIDUE CA B 6492
09
AC9
SOFTWARE
SER B:482 , THR B:483 , GLN B:492 , THR B:496 , HOH B:530
BINDING SITE FOR RESIDUE IMD B 524
10
BC1
SOFTWARE
GLY A:157 , GLU B:120 , ALA B:123 , GLN C:41 , LYS C:44
BINDING SITE FOR RESIDUE IMD B 525
11
BC2
SOFTWARE
HOH B:659 , HOH B:837
BINDING SITE FOR RESIDUE MG B 526
12
BC3
SOFTWARE
ALA C:65 , GLN C:191 , GLY C:424 , ILE C:425 , HIS C:442 , HOH C:497 , HOH C:505 , HOH C:517 , HOH C:535 , HOH C:537 , HOH C:546 , HOH C:558 , HOH C:570 , ICS C:7496 , HOH D:574 , HOH D:634
BINDING SITE FOR RESIDUE HCA C 7494
13
BC4
SOFTWARE
VAL C:70 , ARG C:96 , HIS C:195 , TYR C:229 , CYS C:275 , GLY C:356 , GLY C:357 , ARG C:359 , PHE C:381 , HIS C:442 , HCA C:7494
BINDING SITE FOR RESIDUE ICS C 7496
14
BC5
SOFTWARE
TRP C:294 , HOH C:607 , HOH C:1611
BINDING SITE FOR RESIDUE IMD C 493
15
BC6
SOFTWARE
GLN A:41 , LYS A:44 , GLY C:157 , GLU D:120 , ALA D:123
BINDING SITE FOR RESIDUE IMD C 494
16
BC7
SOFTWARE
CYS C:62 , TYR C:64 , PRO C:85 , GLY C:87 , CYS C:88 , TYR C:91 , CYS C:154 , GLY C:185 , CYS D:70 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188
BINDING SITE FOR RESIDUE 1CL D 7498
17
BC8
SOFTWARE
SER D:482 , THR D:483 , GLN D:492 , THR D:496 , HOH D:527
BINDING SITE FOR RESIDUE IMD D 524
18
BC9
SOFTWARE
CYS C:62 , TYR C:64 , PRO C:85 , GLY C:87 , CYS C:88 , TYR C:91 , CYS C:154 , GLY C:185 , CYS D:70 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188
BINDING SITE FOR RESIDUE CLF D 7499
19
CC1
SOFTWARE
LEU D:253 , ASP D:256 , GLY D:275 , THR D:276 , GLU D:280
BINDING SITE FOR RESIDUE IMD D 525
20
CC2
SOFTWARE
LYS D:9 , HOH D:707
BINDING SITE FOR RESIDUE MG D 526
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: NITROGENASE_1_1 (A:81-88,C:81-88,B:88-95,D:88-95)
2: NITROGENASE_1_2 (B:151-165,D:151-165,A:152-166,C:15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NITROGENASE_1_1
PS00699
Nitrogenases component 1 alpha and beta subunits signature 1.
NIFD_AZOVI
81-88
2
A:81-88
C:81-88
NIFK_AZOVI
88-95
2
B:88-95
D:88-95
2
NITROGENASE_1_2
PS00090
Nitrogenases component 1 alpha and beta subunits signature 2.
NIFK_AZOVI
151-165
2
B:151-165
D:151-165
NIFD_AZOVI
152-166
2
A:152-166
C:152-166
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3u7qa_ (A:)
1b: SCOP_d3u7qc_ (C:)
2a: SCOP_d3u7qb_ (B:)
2b: SCOP_d3u7qd_ (D:)
View:
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Classes
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(
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Folds
(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Helical backbone metal receptor
(102)
Family
:
Nitrogenase iron-molybdenum protein
(41)
Protein domain
:
automated matches
(6)
Azotobacter vinelandii [TaxId: 354]
(6)
1a
d3u7qa_
A:
1b
d3u7qc_
C:
Protein domain
:
Nitrogenase iron-molybdenum protein, beta chain
(20)
Azotobacter vinelandii [TaxId: 354]
(15)
2a
d3u7qb_
B:
2b
d3u7qd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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