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3U7B
Biol. Unit 5
Info
Asym.Unit (305 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (64 KB)
Biol.Unit 4 (65 KB)
Biol.Unit 5 (63 KB)
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(1)
Title
:
A NEW CRYSTAL STRUCTURE OF A FUSARIUM OXYSPORUM GH10 XYLANASE REVEALS THE PRESENCE OF AN EXTENDED LOOP ON TOP OF THE CATALYTIC CLEFT
Authors
:
M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
Date
:
13 Oct 11 (Deposition) - 18 Jul 12 (Release) - 18 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Tim Barrel, Xylanase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
The Structure Of A Gh10 Xylanase From Fusarium Oxysporum Reveals The Presence Of An Extended Loop On Top Of The Catalytic Cleft.
Acta Crystallogr. , Sect. D V. 68 735 2012
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: EC3 (SOFTWARE)
2: EC4 (SOFTWARE)
3: EC5 (SOFTWARE)
4: EC6 (SOFTWARE)
5: EC7 (SOFTWARE)
6: EC8 (SOFTWARE)
7: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
EC3
SOFTWARE
ASP E:289 , SER E:303 , ASP E:309 , HOH E:480 , HOH E:717 , HOH E:1488
BINDING SITE FOR RESIDUE EDO E 406
2
EC4
SOFTWARE
THR D:318 , ASN D:322 , ASN E:100 , ASN E:101 , HOH E:775 , HOH E:776 , HOH E:1176
BINDING SITE FOR RESIDUE EDO E 407
3
EC5
SOFTWARE
GLN D:260 , HOH D:1010 , ASN E:101 , GLN E:105 , VAL E:147 , ILE E:148 , NAG E:509 , HOH E:979
BINDING SITE FOR RESIDUE NAG E 508
4
EC6
SOFTWARE
ARG E:158 , TYR E:196 , NAG E:508 , BMA E:600 , HOH E:1511
BINDING SITE FOR RESIDUE NAG E 509
5
EC7
SOFTWARE
TYR E:196 , NAG E:509 , MAN E:601 , HOH E:1215
BINDING SITE FOR RESIDUE BMA E 600
6
EC8
SOFTWARE
SER E:195 , TYR E:196 , BMA E:600 , HOH E:1854
BINDING SITE FOR RESIDUE MAN E 601
7
EC9
SOFTWARE
LYS B:226 , HOH B:650 , PRO E:295 , PRO E:299 , GLY E:300 , HOH E:610 , HOH E:623
BINDING SITE FOR RESIDUE EDO E 410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GH10_2 (E:1-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_2
PS51760
Glycosyl hydrolases family 10 (GH10) domain profile.
XYNA_FUSO4
1-323
1
-
-
-
-
E:1-323
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3u7ba_ (A:)
1b: SCOP_d3u7bb_ (B:)
1c: SCOP_d3u7bc_ (C:)
1d: SCOP_d3u7bd_ (D:)
1e: SCOP_d3u7be_ (E:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Fungus (Fusarium oxysporum) [TaxId: 5507]
(1)
1a
d3u7ba_
A:
1b
d3u7bb_
B:
1c
d3u7bc_
C:
1d
d3u7bd_
D:
1e
d3u7be_
E:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain E
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (305 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (64 KB)
Header - Biol.Unit 3
Biol.Unit 4 (65 KB)
Header - Biol.Unit 4
Biol.Unit 5 (63 KB)
Header - Biol.Unit 5
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