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3U7B
Biol. Unit 2
Info
Asym.Unit (305 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (64 KB)
Biol.Unit 4 (65 KB)
Biol.Unit 5 (63 KB)
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(1)
Title
:
A NEW CRYSTAL STRUCTURE OF A FUSARIUM OXYSPORUM GH10 XYLANASE REVEALS THE PRESENCE OF AN EXTENDED LOOP ON TOP OF THE CATALYTIC CLEFT
Authors
:
M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
Date
:
13 Oct 11 (Deposition) - 18 Jul 12 (Release) - 18 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Tim Barrel, Xylanase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Dimarogona, E. Topakas, P. Christakopoulos, E. D. Chrysina
The Structure Of A Gh10 Xylanase From Fusarium Oxysporum Reveals The Presence Of An Extended Loop On Top Of The Catalytic Cleft.
Acta Crystallogr. , Sect. D V. 68 735 2012
[
close entry info
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
PRO B:215 , THR B:216 , PHE B:298 , PRO B:299 , GLU B:301 , HOH B:1493 , GLU C:51 , ALA C:52
BINDING SITE FOR RESIDUE EDO B 400
02
BC3
SOFTWARE
VAL B:23 , GLN B:67 , HOH B:916
BINDING SITE FOR RESIDUE EDO B 403
03
BC4
SOFTWARE
TYR B:174 , HIS B:208 , ARG B:249 , TRP B:293 , HOH B:975
BINDING SITE FOR RESIDUE EDO B 401
04
BC5
SOFTWARE
GLY B:121 , CYS B:123 , THR B:166 , HOH B:920 , HOH B:1527
BINDING SITE FOR RESIDUE EDO B 404
05
BC6
SOFTWARE
ASN B:175 , TYR B:178 , GLN B:217 , THR B:219 , HOH B:927
BINDING SITE FOR RESIDUE EDO B 402
06
BC7
SOFTWARE
ASN B:101 , GLN B:105 , ILE B:148 , NAG B:509 , HOH B:1893 , HOH B:1897
BINDING SITE FOR RESIDUE NAG B 508
07
BC8
SOFTWARE
ARG B:158 , TYR B:196 , NAG B:508 , BMA B:600 , HOH B:1576
BINDING SITE FOR RESIDUE NAG B 509
08
BC9
SOFTWARE
SER B:195 , TYR B:196 , NAG B:509 , MAN B:601 , HOH B:1892
BINDING SITE FOR RESIDUE BMA B 600
09
CC1
SOFTWARE
BMA B:600 , MAN B:602
BINDING SITE FOR RESIDUE MAN B 601
10
CC2
SOFTWARE
MAN B:601 , ASP D:275 , HOH D:1398 , HOH D:1663
BINDING SITE FOR RESIDUE MAN B 602
11
CC3
SOFTWARE
GLU B:78 , HOH B:914
BINDING SITE FOR RESIDUE EDO B 405
12
CC4
SOFTWARE
GLY B:13 , LYS B:14 , LYS B:277 , HOH B:1365 , HOH B:1814
BINDING SITE FOR RESIDUE EDO B 407
13
CC5
SOFTWARE
GLU B:51 , ALA B:52 , PRO C:215 , THR C:216 , PHE C:298 , PRO C:299 , GLU C:301 , HOH C:383
BINDING SITE FOR RESIDUE EDO C 400
14
EC9
SOFTWARE
LYS B:226 , HOH B:650 , PRO E:295 , PRO E:299 , GLY E:300 , HOH E:610 , HOH E:623
BINDING SITE FOR RESIDUE EDO E 410
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GH10_2 (B:1-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_2
PS51760
Glycosyl hydrolases family 10 (GH10) domain profile.
XYNA_FUSO4
1-323
1
-
B:1-323
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3u7ba_ (A:)
1b: SCOP_d3u7bb_ (B:)
1c: SCOP_d3u7bc_ (C:)
1d: SCOP_d3u7bd_ (D:)
1e: SCOP_d3u7be_ (E:)
View:
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(
)
Superfamilies
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)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Fungus (Fusarium oxysporum) [TaxId: 5507]
(1)
1a
d3u7ba_
A:
1b
d3u7bb_
B:
1c
d3u7bc_
C:
1d
d3u7bd_
D:
1e
d3u7be_
E:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Search Term(s)
Show PDB file:
Asym.Unit (305 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (64 KB)
Header - Biol.Unit 3
Biol.Unit 4 (65 KB)
Header - Biol.Unit 4
Biol.Unit 5 (63 KB)
Header - Biol.Unit 5
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