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3U5O
Biol. Unit 2
Info
Asym.Unit (568 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (73 KB)
Biol.Unit 5 (74 KB)
Biol.Unit 6 (74 KB)
Biol.Unit 7 (74 KB)
Biol.Unit 8 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF TRIM33 PHD-BROMO AND H3(1-22) K9ME3K14ACK18AC HISTONE PEPTIDE
Authors
:
Z. Wang, D. J. Patel
Date
:
11 Oct 11 (Deposition) - 18 Jan 12 (Release) - 18 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,J (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,L (1x)
Biol. Unit 5: E,M (1x)
Biol. Unit 6: F,N (1x)
Biol. Unit 7: G,O (1x)
Biol. Unit 8: H,P (1x)
Keywords
:
Trim33, Phd, Bromodomain, Tgf-Beta, Epigenetics, Histone, Methylation, K9Me3, K14Ac, K18Ac, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Xi, Z. Wang, A. I. Zaromytidou, X. H. Zhang, L. F. Chow-Tsang, J. X. Liu, H. Kim, A. Barlas, K. Manova-Todorova, V. Kaartinen, L. Studer, W. Mark, D. J. Patel, J. Massague
A Poised Chromatin Platform For Tgf-Beta Access To Master Regulators
Cell(Cambridge, Mass. ) V. 147 1511 2011
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: N(6)-ACETYLLYSINE (ALYa)
1b: N(6)-ACETYLLYSINE (ALYb)
1c: N(6)-ACETYLLYSINE (ALYc)
1d: N(6)-ACETYLLYSINE (ALYd)
1e: N(6)-ACETYLLYSINE (ALYe)
1f: N(6)-ACETYLLYSINE (ALYf)
1g: N(6)-ACETYLLYSINE (ALYg)
1h: N(6)-ACETYLLYSINE (ALYh)
1i: N(6)-ACETYLLYSINE (ALYi)
1j: N(6)-ACETYLLYSINE (ALYj)
1k: N(6)-ACETYLLYSINE (ALYk)
1l: N(6)-ACETYLLYSINE (ALYl)
1m: N(6)-ACETYLLYSINE (ALYm)
1n: N(6)-ACETYLLYSINE (ALYn)
1o: N(6)-ACETYLLYSINE (ALYo)
1p: N(6)-ACETYLLYSINE (ALYp)
2a: N-TRIMETHYLLYSINE (M3La)
2b: N-TRIMETHYLLYSINE (M3Lb)
2c: N-TRIMETHYLLYSINE (M3Lc)
2d: N-TRIMETHYLLYSINE (M3Ld)
2e: N-TRIMETHYLLYSINE (M3Le)
2f: N-TRIMETHYLLYSINE (M3Lf)
2g: N-TRIMETHYLLYSINE (M3Lg)
2h: N-TRIMETHYLLYSINE (M3Lh)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALY
2
Mod. Amino Acid
N(6)-ACETYLLYSINE
2
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
CYS B:890 , CYS B:893 , HIS B:910 , CYS B:913
BINDING SITE FOR RESIDUE ZN B 1
2
AC4
SOFTWARE
CYS B:902 , CYS B:905 , CYS B:928 , CYS B:931
BINDING SITE FOR RESIDUE ZN B 2
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042379 (P885S, chain B, )
2: VAR_042380 (V961M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042379
P
885
S
TRI33_HUMAN
Unclassified
---
B
P
885
S
2
UniProt
VAR_042380
V
961
M
TRI33_HUMAN
Polymorphism
55688622
B
V
961
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H3_1 (J:14-20)
2: ZF_PHD_2 (B:887-934)
3: ZF_PHD_1 (B:890-931)
4: BROMODOMAIN_2 (B:974-1046)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H3_1
PS00322
Histone H3 signature 1.
H31_HUMAN
15-21
1
-
J:14-20
-
-
-
-
-
-
2
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
TRI33_HUMAN
887-934
1
-
B:887-934
-
-
-
-
-
-
3
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
TRI33_HUMAN
890-931
1
-
B:890-931
-
-
-
-
-
-
4
BROMODOMAIN_2
PS50014
Bromodomain profile.
TRI33_HUMAN
974-1046
1
-
B:974-1046
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Chain J
Asymmetric Unit 1
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Asym.Unit (568 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (73 KB)
Header - Biol.Unit 4
Biol.Unit 5 (74 KB)
Header - Biol.Unit 5
Biol.Unit 6 (74 KB)
Header - Biol.Unit 6
Biol.Unit 7 (74 KB)
Header - Biol.Unit 7
Biol.Unit 8 (75 KB)
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