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3U56
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217V TTHL1 IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS
Authors
:
A. G. Gabdulkhakov, N. A. Nevskaya, S. V. Nikonov
Date
:
11 Oct 11 (Deposition) - 31 Oct 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Ribosomal Protein, Rrna, Ribosome, L1 Protuberance In The Ribosome, Rna-Rna Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. V. Tishchenko, E. Y. Nikonova, O. S. Kostareva, A. G. Gabdulkhakov, A. V. Sarskikh, W. Piendl, S. V. Nikonov, M. B. Garber, N. A. Nevskaya
Crystal Structure Of Ribosomal Protein Tthl1 In Complex Wit 80Nt 23S Rna From Thermus Thermophilus
To Be Published
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
2a: MALONATE ION (MLIa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
11
Ligand/Ion
MAGNESIUM ION
2
MLI
1
Ligand/Ion
MALONATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:215 , THR A:216 , GLY A:219 , HOH A:404 , C B:2175 , A B:2176
BINDING SITE FOR RESIDUE MG A 301
02
AC2
SOFTWARE
U B:2109 , G B:2110 , G B:2120 , C B:2178 , HOH B:2336 , HOH B:2339
BINDING SITE FOR RESIDUE MLI B 2201
03
AC3
SOFTWARE
MG B:2203 , HOH B:2307 , HOH B:2308 , HOH B:2309 , HOH B:2310 , HOH B:2311 , HOH B:2313
BINDING SITE FOR RESIDUE MG B 2202
04
AC4
SOFTWARE
G B:2110 , C B:2111 , MG B:2202 , HOH B:2310 , HOH B:2312 , HOH B:2313 , HOH B:2314 , HOH B:2316
BINDING SITE FOR RESIDUE MG B 2203
05
AC5
SOFTWARE
G B:2156 , MG B:2206 , HOH B:2351 , HOH B:2352 , HOH B:2353 , HOH B:2371
BINDING SITE FOR RESIDUE MG B 2204
06
AC6
SOFTWARE
ALA A:33 , C B:2138 , C B:2139 , HOH B:2358 , HOH B:2359 , HOH B:2360
BINDING SITE FOR RESIDUE MG B 2205
07
AC7
SOFTWARE
HOH A:426 , G B:2156 , G B:2157 , MG B:2204 , MG B:2209 , HOH B:2371 , HOH B:2372 , HOH B:2373
BINDING SITE FOR RESIDUE MG B 2206
08
AC8
SOFTWARE
U B:2122 , G B:2123 , HOH B:2375 , HOH B:2381 , HOH B:2382
BINDING SITE FOR RESIDUE MG B 2207
09
AC9
SOFTWARE
G B:2125 , HOH B:2376 , HOH B:2383 , HOH B:2394 , HOH B:2395
BINDING SITE FOR RESIDUE MG B 2208
10
BC1
SOFTWARE
GLU A:202 , HOH A:426 , G B:2157 , MG B:2206 , HOH B:2372 , HOH B:2385 , HOH B:2386 , HOH B:2387
BINDING SITE FOR RESIDUE MG B 2209
11
BC2
SOFTWARE
G B:2149 , U B:2150 , HOH B:2326 , HOH B:2342 , HOH B:2378
BINDING SITE FOR RESIDUE MG B 2210
12
BC3
SOFTWARE
U B:2150 , G B:2151 , HOH B:2318 , HOH B:2326 , HOH B:2341
BINDING SITE FOR RESIDUE MG B 2211
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L1 (A:120-139)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L1
PS01199
Ribosomal protein L1 signature.
RL1_THETH
121-140
1
A:120-139
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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