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3U52
Asym. Unit
Info
Asym.Unit (330 KB)
Biol.Unit 1 (323 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF XENON-PRESSURIZED PHENOL HYDROXYLASE FROM PSEUDOMONAS SP. OX1
Authors
:
M. S. Mccormick, S. J. Lippard
Date
:
10 Oct 11 (Deposition) - 14 Dec 11 (Release) - 11 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
4-Helix Bundle, Hydroxylase, Dioxygen, Hydrocarbons, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Mccormick, S. J. Lippard
Analysis Of Substrate Access To Active Sites In Bacterial Multicomponent Monooxygenase Hydroxylases: X-Ray Crystal Structure Of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. Ox1.
Biochemistry V. 50 11058 2011
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(7, 44)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
5a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
6a: XENON (XEa)
6b: XENON (XEb)
6c: XENON (XEc)
6d: XENON (XEd)
6e: XENON (XEe)
6f: XENON (XEf)
6g: XENON (XEg)
6h: XENON (XEh)
6i: XENON (XEi)
6j: XENON (XEj)
6k: XENON (XEk)
6l: XENON (XEl)
6m: XENON (XEm)
6n: XENON (XEn)
6o: XENON (XEo)
6p: XENON (XEp)
6q: XENON (XEq)
6r: XENON (XEr)
6s: XENON (XEs)
6t: XENON (XEt)
6u: XENON (XEu)
6v: XENON (XEv)
6w: XENON (XEw)
6x: XENON (XEx)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
2
Ligand/Ion
COPPER (II) ION
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
FE
4
Ligand/Ion
FE (III) ION
4
GOL
10
Ligand/Ion
GLYCEROL
5
MPO
1
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
6
XE
24
Ligand/Ion
XENON
7
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:108 , GLU A:138 , HIS A:141 , FE A:513 , GOL A:516 , HOH A:531
BINDING SITE FOR RESIDUE FE A 512
02
AC2
SOFTWARE
GLU A:138 , GLU A:199 , GLU A:233 , HIS A:236 , FE A:512 , HOH A:597
BINDING SITE FOR RESIDUE FE A 513
03
AC3
SOFTWARE
CYS A:399 , CYS A:402 , CYS A:432 , CYS A:436
BINDING SITE FOR RESIDUE ZN A 514
04
AC4
SOFTWARE
HIS A:155 , HIS A:494
BINDING SITE FOR RESIDUE CU A 515
05
AC5
SOFTWARE
GLU A:108 , GLU A:138 , ILE A:194 , PHE A:198 , GLU A:199 , FE A:512
BINDING SITE FOR RESIDUE GOL A 516
06
AC6
SOFTWARE
GLU A:36 , LYS A:117 , ALA A:182 , ARG A:183 , ALA A:185 , GLY A:186 , PHE A:190 , HOH A:621 , TRP C:51
BINDING SITE FOR RESIDUE GOL A 517
07
AC7
SOFTWARE
VAL A:323 , GLU A:410 , LYS A:411 , ARG A:420 , SER A:433 , ASP A:434 , HOH A:600
BINDING SITE FOR RESIDUE GOL A 518
08
AC8
SOFTWARE
ARG A:271 , VAL A:323 , ALA A:327 , PHE A:408 , THR A:409 , SER A:418 , CYS A:432 , SER A:433 , HOH A:601 , HOH A:603
BINDING SITE FOR RESIDUE GOL A 519
09
AC9
SOFTWARE
PHE A:198
BINDING SITE FOR RESIDUE XE A 521
10
BC1
SOFTWARE
PHE A:339
BINDING SITE FOR RESIDUE XE A 522
11
BC2
SOFTWARE
TRP A:170
BINDING SITE FOR RESIDUE XE A 523
12
BC3
SOFTWARE
ASN A:392
BINDING SITE FOR RESIDUE XE A 525
13
BC4
SOFTWARE
GLN A:344
BINDING SITE FOR RESIDUE XE A 526
14
BC5
SOFTWARE
SER A:197
BINDING SITE FOR RESIDUE XE A 528
15
BC6
SOFTWARE
GLU B:108 , GLU B:138 , HIS B:141 , FE B:513 , GOL B:519 , HOH B:532
BINDING SITE FOR RESIDUE FE B 512
16
BC7
SOFTWARE
GLU B:138 , GLU B:199 , GLU B:233 , HIS B:236 , FE B:512 , HOH B:533
BINDING SITE FOR RESIDUE FE B 513
17
BC8
SOFTWARE
CYS B:399 , CYS B:402 , CYS B:432 , CYS B:436
BINDING SITE FOR RESIDUE ZN B 514
18
BC9
SOFTWARE
HIS B:155 , HIS B:494
BINDING SITE FOR RESIDUE CU B 515
19
CC1
SOFTWARE
GLU B:36 , GLN B:113 , GLY B:114 , LYS B:117 , VAL B:118 , ARG B:183 , ALA B:185 , GLY B:186 , PRO B:187 , TRP D:51 , GLY D:142
BINDING SITE FOR RESIDUE MPO B 516
20
CC2
SOFTWARE
GLN B:15 , TYR B:16 , ARG B:19 , ASP B:20 , SER B:48 , ALA B:125
BINDING SITE FOR RESIDUE EPE B 517
21
CC3
SOFTWARE
LEU B:10 , TYR B:14 , ARG B:55 , HOH B:584
BINDING SITE FOR RESIDUE GOL B 518
22
CC4
SOFTWARE
LEU B:107 , GLU B:108 , ALA B:111 , GLU B:138 , ILE B:194 , PHE B:198 , GLU B:199 , FE B:512
BINDING SITE FOR RESIDUE GOL B 519
23
CC5
SOFTWARE
LEU B:275
BINDING SITE FOR RESIDUE XE B 521
24
CC6
SOFTWARE
PHE B:339
BINDING SITE FOR RESIDUE XE B 522
25
CC7
SOFTWARE
TRP B:170
BINDING SITE FOR RESIDUE XE B 523
26
CC8
SOFTWARE
ASN B:392
BINDING SITE FOR RESIDUE XE B 525
27
CC9
SOFTWARE
GLN B:344
BINDING SITE FOR RESIDUE XE B 526
28
DC1
SOFTWARE
SER B:197
BINDING SITE FOR RESIDUE XE B 528
29
DC2
SOFTWARE
ASN E:116
BINDING SITE FOR RESIDUE GOL C 334
30
DC3
SOFTWARE
GLY C:224 , PRO C:228 , TYR C:257 , GLU C:316 , ARG C:320 , HOH C:377 , HOH C:536
BINDING SITE FOR RESIDUE GOL C 335
31
DC4
SOFTWARE
TYR C:227
BINDING SITE FOR RESIDUE XE C 336
32
DC5
SOFTWARE
GLN B:449 , PHE D:45 , TYR D:47 , ARG D:48 , THR D:56 , LEU D:57
BINDING SITE FOR RESIDUE GOL D 334
33
DC6
SOFTWARE
TYR D:227 , ASP D:232 , TYR D:257
BINDING SITE FOR RESIDUE XE D 335
34
DC7
SOFTWARE
VAL F:3 , ASN F:4 , ALA F:5 , TYR F:7 , TYR F:9
BINDING SITE FOR RESIDUE GOL F 120
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (330 KB)
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