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3U1U
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG PLUS-3 DOMAIN
Authors
:
Y. Guo, W. Tempel, C. Bian, A. K. Wernimont, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, J. Min, Structural Genomics Consor (Sgc)
Date
:
30 Sep 11 (Deposition) - 04 Apr 12 (Release) - 04 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Plus-3, Transcription Elongation, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Guo, W. Tempel, C. Bian, A. K. Wernimont, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, J. Min
Crystal Structure Of Rna Polymerase-Associated Protein Rtf1 Homolog Plus-3 Domain
To Be Published
[
close entry info
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
4j: UNKNOWN ATOM OR ION (UNXj)
4k: UNKNOWN ATOM OR ION (UNXk)
4l: UNKNOWN ATOM OR ION (UNXl)
4m: UNKNOWN ATOM OR ION (UNXm)
4n: UNKNOWN ATOM OR ION (UNXn)
4o: UNKNOWN ATOM OR ION (UNXo)
4p: UNKNOWN ATOM OR ION (UNXp)
4q: UNKNOWN ATOM OR ION (UNXq)
4r: UNKNOWN ATOM OR ION (UNXr)
4s: UNKNOWN ATOM OR ION (UNXs)
4t: UNKNOWN ATOM OR ION (UNXt)
4u: UNKNOWN ATOM OR ION (UNXu)
4v: UNKNOWN ATOM OR ION (UNXv)
4w: UNKNOWN ATOM OR ION (UNXw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
4
Ligand/Ion
SULFATE ION
4
UNX
23
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:374 , THR A:420 , HOH A:620 , THR B:411 , ALA B:412 , LYS B:413 , ARG B:438
BINDING SITE FOR RESIDUE SO4 A 500
2
AC2
SOFTWARE
HIS A:374 , THR A:422 , ASN A:423
BINDING SITE FOR RESIDUE SO4 A 501
3
AC3
SOFTWARE
PHE A:460 , GLY A:463 , MSE A:464 , GLN A:465 , HOH A:621 , HOH A:630
BINDING SITE FOR RESIDUE GOL A 502
4
AC4
SOFTWARE
SER B:350 , TYR B:415 , GLN B:416 , ARG B:421 , HOH B:612
BINDING SITE FOR RESIDUE SO4 B 500
5
AC5
SOFTWARE
ARG A:366 , ILE B:391 , ARG B:401 , ARG B:435 , HOH B:621
BINDING SITE FOR RESIDUE SO4 B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PLUS3 (A:353-482,B:353-482)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLUS3
PS51360
Plus3 domain profile.
RTF1_HUMAN
353-484
2
A:353-482
B:353-482
[
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Exons
(4, 8)
Info
All Exons
Exon 1.9 (A:348-401 (gaps) | B:350-401 (gaps...)
Exon 1.10b (A:402-429 | B:402-429)
Exon 1.11 (A:429-458 | B:429-458)
Exon 1.12 (A:459-482 | B:459-482)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10b
3: Boundary 1.10b/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000389629
1a
ENSE00002188164
chr15:
41709302-41709511
210
RTF1_HUMAN
1-66
66
0
-
-
1.2
ENST00000389629
2
ENSE00001685099
chr15:
41730519-41730629
111
RTF1_HUMAN
67-103
37
0
-
-
1.4b
ENST00000389629
4b
ENSE00001644351
chr15:
41745099-41745246
148
RTF1_HUMAN
104-153
50
0
-
-
1.5
ENST00000389629
5
ENSE00000931009
chr15:
41749870-41750074
205
RTF1_HUMAN
153-221
69
0
-
-
1.6
ENST00000389629
6
ENSE00001029847
chr15:
41756969-41757083
115
RTF1_HUMAN
221-259
39
0
-
-
1.7
ENST00000389629
7
ENSE00000931011
chr15:
41758339-41758450
112
RTF1_HUMAN
260-297
38
0
-
-
1.8
ENST00000389629
8
ENSE00000931012
chr15:
41762455-41762590
136
RTF1_HUMAN
297-342
46
0
-
-
1.9
ENST00000389629
9
ENSE00000931013
chr15:
41763370-41763547
178
RTF1_HUMAN
342-401
60
2
A:348-401 (gaps)
B:350-401 (gaps)
54
52
1.10b
ENST00000389629
10b
ENSE00000931014
chr15:
41766818-41766900
83
RTF1_HUMAN
402-429
28
2
A:402-429
B:402-429
28
28
1.11
ENST00000389629
11
ENSE00001152999
chr15:
41767723-41767810
88
RTF1_HUMAN
429-458
30
2
A:429-458
B:429-458
30
30
1.12
ENST00000389629
12
ENSE00001152995
chr15:
41767910-41768017
108
RTF1_HUMAN
459-494
36
2
A:459-482
B:459-482
24
24
1.13
ENST00000389629
13
ENSE00001152991
chr15:
41768644-41768721
78
RTF1_HUMAN
495-520
26
0
-
-
1.14b
ENST00000389629
14b
ENSE00001152986
chr15:
41769363-41769484
122
RTF1_HUMAN
521-561
41
0
-
-
1.15
ENST00000389629
15
ENSE00001152980
chr15:
41769656-41769713
58
RTF1_HUMAN
561-580
20
0
-
-
1.16
ENST00000389629
16
ENSE00000931020
chr15:
41770746-41770823
78
RTF1_HUMAN
581-606
26
0
-
-
1.17
ENST00000389629
17
ENSE00001506418
chr15:
41771301-41771396
96
RTF1_HUMAN
607-638
32
0
-
-
1.18
ENST00000389629
18
ENSE00000931022
chr15:
41772412-41772523
112
RTF1_HUMAN
639-676
38
0
-
-
1.19b
ENST00000389629
19b
ENSE00001944328
chr15:
41772779-41775761
2983
RTF1_HUMAN
676-710
35
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3u1ua_ (A:)
1b: SCOP_d3u1ub_ (B:)
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Classes
(
)
(
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Folds
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(
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Superfamilies
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Plus3-like
(4)
Family
:
Plus3
(4)
Protein domain
:
RNA polymerase-associated protein RTF1 homolog
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3u1ua_
A:
1b
d3u1ub_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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