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3U0S
Asym. Unit
Info
Asym.Unit (238 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENZYME REDESIGNED THROUGH MULTIPLAYER ONLINE GAMING: CE6
Authors
:
J. B. Bale, B. W. Shen, B. L. Stoddard
Date
:
29 Sep 11 (Deposition) - 01 Feb 12 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Engineering, Computer-Aided Design, Computationally-Directed Design, Multiplayer Online Gaming, Crowdsourcing, Foldit, Diels- Alder, Enzyme Design, Active Site Redesign, Substrate Specificity, Beta-Propeller, Helix-Loop-Helix, Loop Remodel, Hydrolase, De Novo Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. B. Eiben, J. B. Siegel, J. B. Bale, S. Cooper, F. Khatib, B. W. Shen, F. Players, B. L. Stoddard, Z. Popovic, D. Baker
Increased Diels-Alderase Activity Through Backbone Remodeling Guided By Foldit Players.
Nat. Biotechnol. V. 30 190 2012
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
GOL
6
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:39 , LEU A:42 , THR A:43 , GLN A:208 , LYS A:238 , TRP A:257 , HOH A:378
BINDING SITE FOR RESIDUE EPE A 338
02
AC2
SOFTWARE
PHE A:324 , GLY A:325 , PRO B:48 , TYR B:52
BINDING SITE FOR RESIDUE GOL A 339
03
AC3
SOFTWARE
LEU A:42 , LEU A:161 , LYS A:238 , PHE B:327
BINDING SITE FOR RESIDUE GOL A 340
04
AC4
SOFTWARE
PHE A:165 , HOH A:403 , LYS B:27
BINDING SITE FOR RESIDUE GOL A 341
05
AC5
SOFTWARE
TYR A:82 , ASP A:249 , ARG A:312
BINDING SITE FOR RESIDUE SO4 A 342
06
AC6
SOFTWARE
ARG A:162 , LYS B:323
BINDING SITE FOR RESIDUE SO4 A 343
07
AC7
SOFTWARE
LYS A:53 , ARG A:56 , LYS A:273 , HOH A:462
BINDING SITE FOR RESIDUE SO4 A 344
08
AC8
SOFTWARE
LEU B:42 , THR B:43 , GLN B:208 , LYS B:238 , TRP B:257 , HOH B:356 , HOH B:452
BINDING SITE FOR RESIDUE EPE B 338
09
AC9
SOFTWARE
ILE B:224 , LYS B:227
BINDING SITE FOR RESIDUE GOL B 339
10
BC1
SOFTWARE
GLU B:163
BINDING SITE FOR RESIDUE GOL B 340
11
BC2
SOFTWARE
PHE B:324
BINDING SITE FOR RESIDUE GOL B 341
12
BC3
SOFTWARE
GLU B:248 , ASP B:249 , SO4 B:344
BINDING SITE FOR RESIDUE NA B 342
13
BC4
SOFTWARE
TYR B:82 , PRO B:154 , GLN B:311 , SO4 B:344
BINDING SITE FOR RESIDUE NA B 343
14
BC5
SOFTWARE
TYR B:82 , ASP B:249 , ARG B:312 , NA B:342 , NA B:343
BINDING SITE FOR RESIDUE SO4 B 344
15
BC6
SOFTWARE
LYS A:323 , ARG B:162
BINDING SITE FOR RESIDUE SO4 B 345
16
BC7
SOFTWARE
LYS B:53 , ARG B:56 , LYS B:273 , HOH B:467
BINDING SITE FOR RESIDUE SO4 B 346
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
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