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3TYP
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE INORGANIC TRIPHOSPHATASE NE1496
Authors
:
V. V. Lunin, T. Skarina, O. Onopriyenko, T. A. Binkowski, A. Joachimiak A. M. Edwards, A. Savchenko
Date
:
26 Sep 11 (Deposition) - 09 May 12 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Inorganic Triphosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Delvaux, M. R. V. S. Murty, V. Gabelica, B. Lakaye, V. V. Lunin, T. Skarina, O. Onopriyenko, G. Kohn, P. Wins, E. De Pauw, L. Bettendorff
A Specific Inorganic Triphosphatase From Nitrosomonas Europaea: Structure And Catalytic Mechanism.
J. Biol. Chem. V. 286 34023 2011
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
NA
8
Ligand/Ion
SODIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:130 , PHE A:132 , HOH A:173 , HOH A:186 , HOH A:240 , HOH A:246
BINDING SITE FOR RESIDUE NA A 154
02
AC2
SOFTWARE
GLY A:80 , ALA A:148 , SER A:150 , HOH A:177 , HOH A:182
BINDING SITE FOR RESIDUE NA A 155
03
AC3
SOFTWARE
HIS A:106 , SER A:108 , HOH A:193 , HOH A:261 , HOH A:265
BINDING SITE FOR RESIDUE NA A 156
04
AC4
SOFTWARE
PRO A:32 , ASP A:34 , ASP A:94 , HOH A:187 , HOH A:254 , HOH A:354
BINDING SITE FOR RESIDUE NA A 157
05
AC5
SOFTWARE
ARG A:82 , VAL A:83 , GLU A:84 , ALA A:104 , LEU A:107 , HOH A:180
BINDING SITE FOR RESIDUE EDO A 158
06
AC6
SOFTWARE
PRO B:130 , PHE B:132 , HOH B:174 , HOH B:176 , HOH B:242 , HOH B:290
BINDING SITE FOR RESIDUE NA B 154
07
AC7
SOFTWARE
GLY B:80 , ALA B:148 , SER B:150 , HOH B:163 , HOH B:167
BINDING SITE FOR RESIDUE NA B 155
08
AC8
SOFTWARE
HIS B:106 , SER B:108 , HOH B:196 , HOH B:259 , HOH B:343
BINDING SITE FOR RESIDUE NA B 156
09
AC9
SOFTWARE
PRO B:32 , ASP B:34 , ASP B:94 , HOH B:184 , HOH B:331
BINDING SITE FOR RESIDUE NA B 157
10
BC1
SOFTWARE
ARG B:82 , VAL B:83 , GLU B:84 , ALA B:104 , LEU B:107 , HOH B:173
BINDING SITE FOR RESIDUE EDO B 158
11
BC2
SOFTWARE
MET A:73 , GLN B:65 , HOH B:341
BINDING SITE FOR RESIDUE EDO B 159
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTH (B:3-149)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTH
PS51707
CYTH domain profile.
3PASE_NITEU
1-148
1
B:3-149
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3typa_ (A:)
1b: SCOP_d3typb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CYTH-like phosphatases
(16)
Superfamily
:
CYTH-like phosphatases
(16)
Family
:
CYTH domain
(8)
Protein domain
:
automated matches
(2)
Nitrosomonas europaea [TaxId: 915]
(1)
1a
d3typa_
A:
1b
d3typb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (63 KB)
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