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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3TXI
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
HEWL CO-CRYSTALLIZATION WITH CARBOPLATIN IN DMSO MEDIA WITH PARATONE AS THE CRYOPROTECTANT
Authors
:
S. W. M. Tanley, A. M. M. Schreurs, J. R. Helliwell, L. M. J. Kroon-Batenb
Date
:
23 Sep 11 (Deposition) - 30 Jan 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hen Egg White Lysozyme (Hewl), Bacterial Cell Wall Lysis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Tanley, A. M. Schreurs, J. R. Helliwell, L. M. Kroon-Batenburg
Experience With Exchange And Archiving Of Raw Data: Comparison Of Data From Two Diffractometers And Four Software Packages On A Series Of Lysozyme Crystals.
J. Appl. Crystallogr. V. 46 108 2013
[
close entry info
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
3a: SODIUM ION (NAa)
4a: CARBOPLATIN (QPTa)
4b: CARBOPLATIN (QPTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
DMS
14
Ligand/Ion
DIMETHYL SULFOXIDE
3
NA
1
Ligand/Ion
SODIUM ION
4
QPT
2
Ligand/Ion
CARBOPLATIN
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:23 , ASN A:113
BINDING SITE FOR RESIDUE CL A 1130
02
AC2
SOFTWARE
SER A:24 , GLY A:26 , GLN A:121
BINDING SITE FOR RESIDUE CL A 1131
03
AC3
SOFTWARE
ASN A:65 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72
BINDING SITE FOR RESIDUE CL A 1132
04
AC4
SOFTWARE
ILE A:88 , QPT A:130
BINDING SITE FOR RESIDUE CL A 1133
05
AC5
SOFTWARE
PHE A:38 , DMS A:137
BINDING SITE FOR RESIDUE CL A 1134
06
AC6
SOFTWARE
ASN A:65 , PRO A:79 , HOH A:2085
BINDING SITE FOR RESIDUE CL A 1135
07
AC7
SOFTWARE
ARG A:73 , ASN A:74 , DMS A:138
BINDING SITE FOR RESIDUE CL A 1136
08
AC8
SOFTWARE
ALA A:42 , ASN A:44 , ARG A:68 , HOH A:2044
BINDING SITE FOR RESIDUE CL A 1137
09
AC9
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , HOH A:2077 , HOH A:2082
BINDING SITE FOR RESIDUE NA A 1138
10
BC1
SOFTWARE
ARG A:14 , HIS A:15 , ASP A:87 , ILE A:88 , THR A:89 , CL A:1133 , HOH A:2010
BINDING SITE FOR RESIDUE QPT A 130
11
BC2
SOFTWARE
HIS A:15 , DMS A:134 , HOH A:2105
BINDING SITE FOR RESIDUE QPT A 131
12
BC3
SOFTWARE
GLN A:57 , ILE A:58 , ASN A:59 , TRP A:63 , ILE A:98 , ALA A:107 , TRP A:108
BINDING SITE FOR RESIDUE DMS A 132
13
BC4
SOFTWARE
ARG A:5 , ALA A:122 , TRP A:123 , HOH A:2048
BINDING SITE FOR RESIDUE DMS A 133
14
BC5
SOFTWARE
HIS A:15 , LYS A:96 , QPT A:131 , HOH A:2025
BINDING SITE FOR RESIDUE DMS A 134
15
BC6
SOFTWARE
TRP A:62 , LEU A:75 , ASP A:101
BINDING SITE FOR RESIDUE DMS A 135
16
BC7
SOFTWARE
ASP A:101 , GLY A:102 , ASN A:103 , ARG A:112 , DMS A:145
BINDING SITE FOR RESIDUE DMS A 136
17
BC8
SOFTWARE
LYS A:33 , TRP A:62 , ARG A:73 , CL A:1134 , HOH A:2045 , HOH A:2046
BINDING SITE FOR RESIDUE DMS A 137
18
BC9
SOFTWARE
ASN A:74 , ASN A:77 , CL A:1136
BINDING SITE FOR RESIDUE DMS A 138
19
CC1
SOFTWARE
LYS A:13 , PRO A:70 , LEU A:129
BINDING SITE FOR RESIDUE DMS A 139
20
CC2
SOFTWARE
VAL A:109 , ARG A:112 , ARG A:125
BINDING SITE FOR RESIDUE DMS A 140
21
CC3
SOFTWARE
ASN A:93 , LYS A:97 , HOH A:2087
BINDING SITE FOR RESIDUE DMS A 142
22
CC4
SOFTWARE
TRP A:63 , LYS A:97 , HOH A:2108
BINDING SITE FOR RESIDUE DMS A 143
23
CC5
SOFTWARE
GLY A:117 , DMS A:145 , HOH A:2120
BINDING SITE FOR RESIDUE DMS A 144
24
CC6
SOFTWARE
ASN A:103 , ASP A:119 , DMS A:136 , DMS A:144
BINDING SITE FOR RESIDUE DMS A 145
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3txia_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d3txia_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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