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3TXB
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
HEWL CO-CRYSTALLIZATION WITH CISPLATIN IN AQUEOUS MEDIA WITH GLYCEROL AS THE CRYOPROTECTANT
Authors
:
S. W. M. Tanley, A. M. M. Schreurs, J. R. Helliwell, L. M. J. Kroon-Batenb
Date
:
23 Sep 11 (Deposition) - 30 Jan 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hen Egg White Lysozyme (Hewl), Bacterial Cell Wall Lysis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Tanley, A. M. Schreurs, J. R. Helliwell, L. M. Kroon-Batenburg
Experience With Exchange And Archiving Of Raw Data: Comparison Of Data From Two Diffractometers And Four Software Packages On A Series Of Lysozyme Crystals.
J. Appl. Crystallogr. V. 46 108 2013
[
close entry info
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Hetero Components
(3, 39)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2ad: GLYCEROL (GOLad)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
GOL
30
Ligand/Ion
GLYCEROL
3
NA
1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:23 , ASN A:113 , GOL A:156
BINDING SITE FOR RESIDUE CL A 1130
02
AC2
SOFTWARE
SER A:24 , GLY A:26 , GOL A:136
BINDING SITE FOR RESIDUE CL A 1131
03
AC3
SOFTWARE
GLY A:67 , THR A:69
BINDING SITE FOR RESIDUE CL A 1132
04
AC4
SOFTWARE
ILE A:88 , GOL A:138
BINDING SITE FOR RESIDUE CL A 1133
05
AC5
SOFTWARE
LYS A:33 , GOL A:144
BINDING SITE FOR RESIDUE CL A 1134
06
AC6
SOFTWARE
ASN A:65 , GOL A:155
BINDING SITE FOR RESIDUE CL A 1135
07
AC7
SOFTWARE
ARG A:73 , ASN A:74 , GOL A:139
BINDING SITE FOR RESIDUE CL A 1136
08
AC8
SOFTWARE
ALA A:42 , ARG A:68
BINDING SITE FOR RESIDUE CL A 1137
09
AC9
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , HOH A:2077 , HOH A:2082
BINDING SITE FOR RESIDUE NA A 1138
10
BC1
SOFTWARE
ALA A:122 , TRP A:123 , GOL A:134 , GOL A:141
BINDING SITE FOR RESIDUE GOL A 801
11
BC2
SOFTWARE
GLN A:57 , ASN A:59 , ALA A:107 , HOH A:2071 , HOH A:2074 , HOH A:2112
BINDING SITE FOR RESIDUE GOL A 130
12
BC3
SOFTWARE
TYR A:20 , ARG A:21 , GOL A:137 , GOL A:146 , GOL A:148
BINDING SITE FOR RESIDUE GOL A 131
13
BC4
SOFTWARE
ALA A:82 , ASP A:87 , THR A:89 , ALA A:90 , GOL A:154
BINDING SITE FOR RESIDUE GOL A 132
14
BC5
SOFTWARE
TRP A:62 , LEU A:75 , ASP A:101 , GLN A:121 , GOL A:144
BINDING SITE FOR RESIDUE GOL A 133
15
BC6
SOFTWARE
PHE A:34 , THR A:118 , TRP A:123 , GOL A:141 , GOL A:801
BINDING SITE FOR RESIDUE GOL A 134
16
BC7
SOFTWARE
SER A:36 , ASN A:37 , ASN A:39 , GLY A:67 , ARG A:68 , GOL A:142 , GOL A:143
BINDING SITE FOR RESIDUE GOL A 135
17
BC8
SOFTWARE
ASP A:18 , SER A:24 , LEU A:25 , ARG A:61 , ILE A:124 , GOL A:142 , GOL A:147 , GOL A:150 , CL A:1131
BINDING SITE FOR RESIDUE GOL A 136
18
BC9
SOFTWARE
TYR A:20 , LYS A:96 , GOL A:131 , GOL A:149
BINDING SITE FOR RESIDUE GOL A 137
19
CC1
SOFTWARE
ALA A:11 , ARG A:14 , CL A:1133 , HOH A:2010 , HOH A:2097
BINDING SITE FOR RESIDUE GOL A 138
20
CC2
SOFTWARE
SER A:72 , CL A:1136 , HOH A:2082
BINDING SITE FOR RESIDUE GOL A 139
21
CC3
SOFTWARE
VAL A:109
BINDING SITE FOR RESIDUE GOL A 140
22
CC4
SOFTWARE
GLY A:117 , GOL A:134 , GOL A:801
BINDING SITE FOR RESIDUE GOL A 141
23
CC5
SOFTWARE
ASN A:19 , ASN A:37 , GOL A:135 , GOL A:136 , GOL A:143 , GOL A:147 , HOH A:2036
BINDING SITE FOR RESIDUE GOL A 142
24
CC6
SOFTWARE
PRO A:70 , GLY A:71 , GOL A:135 , GOL A:142 , GOL A:147 , HOH A:2029
BINDING SITE FOR RESIDUE GOL A 143
25
CC7
SOFTWARE
ARG A:5 , GOL A:133 , GOL A:157 , CL A:1134
BINDING SITE FOR RESIDUE GOL A 144
26
CC8
SOFTWARE
HIS A:15 , ASN A:93 , LYS A:96 , GOL A:149 , HOH A:2106
BINDING SITE FOR RESIDUE GOL A 145
27
CC9
SOFTWARE
ASN A:44 , ARG A:45 , GOL A:131 , GOL A:156 , HOH A:2020
BINDING SITE FOR RESIDUE GOL A 146
28
DC1
SOFTWARE
ARG A:61 , TRP A:62 , GLY A:71 , ARG A:73 , GOL A:136 , GOL A:142 , GOL A:143
BINDING SITE FOR RESIDUE GOL A 147
29
DC2
SOFTWARE
TYR A:20 , ARG A:21 , THR A:47 , SER A:100 , GOL A:131
BINDING SITE FOR RESIDUE GOL A 148
30
DC3
SOFTWARE
ARG A:14 , GLY A:16 , THR A:47 , ARG A:128 , GOL A:137 , GOL A:145
BINDING SITE FOR RESIDUE GOL A 149
31
DC4
SOFTWARE
ARG A:61 , TRP A:62 , GLN A:121 , ILE A:124 , ARG A:125 , GOL A:136 , GOL A:151 , HOH A:2062
BINDING SITE FOR RESIDUE GOL A 150
32
DC5
SOFTWARE
ASN A:46 , ASP A:48 , SER A:50 , ASN A:59 , ARG A:61 , GOL A:150 , HOH A:2062
BINDING SITE FOR RESIDUE GOL A 151
33
DC6
SOFTWARE
GLY A:126 , CYS A:127 , ARG A:128 , GOL A:157
BINDING SITE FOR RESIDUE GOL A 152
34
DC7
SOFTWARE
ARG A:73 , ASN A:77
BINDING SITE FOR RESIDUE GOL A 153
35
DC8
SOFTWARE
ILE A:78 , ALA A:82 , THR A:89 , ALA A:90 , GOL A:132 , HOH A:2037
BINDING SITE FOR RESIDUE GOL A 154
36
DC9
SOFTWARE
ASN A:74 , ASN A:77 , ILE A:78 , PRO A:79 , CL A:1135
BINDING SITE FOR RESIDUE GOL A 155
37
EC1
SOFTWARE
ARG A:21 , GLU A:35 , GOL A:146 , CL A:1130 , HOH A:2020 , HOH A:2038 , HOH A:2041
BINDING SITE FOR RESIDUE GOL A 156
38
EC2
SOFTWARE
ARG A:5 , CYS A:6 , GOL A:144 , GOL A:152 , HOH A:2012
BINDING SITE FOR RESIDUE GOL A 157
39
EC3
SOFTWARE
THR A:43 , ASN A:44 , ARG A:45 , THR A:51 , ARG A:68 , HOH A:2053
BINDING SITE FOR RESIDUE GOL A 158
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3txba_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d3txba_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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