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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3TX7
Asym. Unit
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Asym.Unit (121 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX
Authors
:
F. Yumoto, R. Fletterick
Date
:
22 Sep 11 (Deposition) - 14 Dec 11 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lrh-1, Beta-Catenin, Armadillo Repeat, Nuclear Receptor Ligand Binding Domain, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Yumoto, P. Nguyen, E. P. Sablin, J. D. Baxter, P. Webb, R. J. Fletterick
Structural Basis Of Coactivation Of Liver Receptor Homolog- By Beta-Catenin.
Proc. Natl. Acad. Sci. Usa V. 109 143 2012
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPY... (P6La)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
P6L
1
Ligand/Ion
(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL(8E)-OCTADEC-8-ENOATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:341 , PHE B:342 , MET B:345 , TRP B:382 , SER B:383 , LEU B:386 , ILE B:387 , HIS B:390 , ILE B:416 , GLN B:419 , ALA B:420 , GLY B:421 , THR B:423 , LEU B:424 , MET B:428 , ALA B:513 , TYR B:516 , LEU B:517 , LYS B:520
BINDING SITE FOR RESIDUE P6L B 100
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072282 (L388P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072282
L
388
P
CTNB1_HUMAN
Disease (MRD19)
---
A
L
388
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 9)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:193-236|A:151-191|A:235-277|A:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
CTNB1_HUMAN
193-236
151-191
235-277
277-319
319-362
400-442
442-484
489-532
594-636
9
A:193-236
A:151-191
A:235-277
A:277-319
A:319-362
A:400-442
A:442-484
A:489-532
A:594-636
[
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Exons
(14, 14)
Info
All Exons
Exon 1.7 (B:299-363 (gaps))
Exon 1.9 (B:374-410)
Exon 1.10 (B:411-460)
Exon 1.11b (B:460-538 (gaps))
Exon 2.10d (A:148-165)
Exon 2.11b (A:166-245)
Exon 2.12 (A:245-312)
Exon 2.13 (A:313-361)
Exon 2.14 (A:361-395)
Exon 2.15 (A:396-508)
Exon 2.16a (A:509-561 (gaps))
Exon 2.17b (A:562-601)
Exon 2.18a (A:602-652)
Exon 2.18d (A:652-661)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.6/1.7
02: Boundary 1.7/1.9
03: Boundary 1.9/1.10
04: Boundary 1.10/1.11b
05: Boundary 1.11b/-
06: Boundary 2.9e/2.10d
07: Boundary 2.10d/2.11b
08: Boundary 2.11b/2.12
09: Boundary 2.12/2.13
10: Boundary 2.13/2.14
11: Boundary 2.14/2.15
12: Boundary 2.15/2.16a
13: Boundary 2.16a/2.17b
14: Boundary 2.17b/2.18a
15: Boundary 2.18a/2.18d
16: Boundary 2.18d/2.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367362
1a
ENSE00001869866
chr1:
199996730-199997039
310
NR5A2_HUMAN
1-22
22
0
-
-
1.4b
ENST00000367362
4b
ENSE00001624402
chr1:
200008786-200008923
138
NR5A2_HUMAN
22-68
47
0
-
-
1.5a
ENST00000367362
5a
ENSE00001705336
chr1:
200012902-200013020
119
NR5A2_HUMAN
68-107
40
0
-
-
1.6
ENST00000367362
6
ENSE00001742097
chr1:
200014571-200014712
142
NR5A2_HUMAN
108-155
48
0
-
-
1.7
ENST00000367362
7
ENSE00001616774
chr1:
200017300-200017946
647
NR5A2_HUMAN
155-370
216
1
B:299-363 (gaps)
65
1.9
ENST00000367362
9
ENSE00001680332
chr1:
200080330-200080449
120
NR5A2_HUMAN
371-410
40
1
B:374-410
37
1.10
ENST00000367362
10
ENSE00001632410
chr1:
200089936-200090083
148
NR5A2_HUMAN
411-460
50
1
B:411-460
50
1.11b
ENST00000367362
11b
ENSE00001420464
chr1:
200143091-200146552
3462
NR5A2_HUMAN
460-541
82
1
B:460-538 (gaps)
79
2.4e
ENST00000396185
4e
ENSE00001933873
chr3:
41240996-41241161
166
CTNB1_HUMAN
-
0
0
-
-
2.7
ENST00000396185
7
ENSE00002142861
chr3:
41265512-41265572
61
CTNB1_HUMAN
1-5
5
0
-
-
2.9e
ENST00000396185
9e
ENSE00001697426
chr3:
41266017-41266244
228
CTNB1_HUMAN
5-81
77
0
-
-
2.10d
ENST00000396185
10d
ENSE00001748344
chr3:
41266445-41266698
254
CTNB1_HUMAN
81-165
85
1
A:148-165
18
2.11b
ENST00000396185
11b
ENSE00001692569
chr3:
41266825-41267063
239
CTNB1_HUMAN
166-245
80
1
A:166-245
80
2.12
ENST00000396185
12
ENSE00001643204
chr3:
41267151-41267352
202
CTNB1_HUMAN
245-312
68
1
A:245-312
68
2.13
ENST00000396185
13
ENSE00001767208
chr3:
41268699-41268843
145
CTNB1_HUMAN
313-361
49
1
A:313-361
49
2.14
ENST00000396185
14
ENSE00001649367
chr3:
41274832-41274935
104
CTNB1_HUMAN
361-395
35
1
A:361-395
35
2.15
ENST00000396185
15
ENSE00001718373
chr3:
41275020-41275358
339
CTNB1_HUMAN
396-508
113
1
A:396-508
113
2.16a
ENST00000396185
16a
ENSE00001592339
chr3:
41275630-41275788
159
CTNB1_HUMAN
509-561
53
1
A:509-561 (gaps)
53
2.17b
ENST00000396185
17b
ENSE00001707050
chr3:
41277215-41277334
120
CTNB1_HUMAN
562-601
40
1
A:562-601
40
2.18a
ENST00000396185
18a
ENSE00002175036
chr3:
41277840-41277990
151
CTNB1_HUMAN
602-652
51
1
A:602-652
51
2.18d
ENST00000396185
18d
ENSE00001782706
chr3:
41278079-41278200
122
CTNB1_HUMAN
652-692
41
1
A:652-661
10
2.19
ENST00000396185
19
ENSE00001805633
chr3:
41279507-41279567
61
CTNB1_HUMAN
693-713
21
0
-
-
2.20c
ENST00000396185
20c
ENSE00001524181
chr3:
41280625-41280845
221
CTNB1_HUMAN
713-781
69
0
-
-
2.20g
ENST00000396185
20g
ENSE00001524178
chr3:
41281151-41281934
784
CTNB1_HUMAN
-
0
0
-
-
[
close EXON info
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3tx7a_ (A:)
2a: SCOP_d3tx7b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3tx7a_
A:
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d3tx7b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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