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3TV4
Biol. Unit 1
Info
Asym.Unit (95 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
HUMAN B-RAF KINASE DOMAIN IN COMPLEX WITH AN BROMOPYRIDINE BENZAMIDE INHIBITOR
Authors
:
W. C. Voegtli, L. T. Selby, W. -I. Wu
Date
:
19 Sep 11 (Deposition) - 05 Oct 11 (Release) - 24 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase, Kinase Inhibitor, Transferase, Ras, C-Raf, Mek, Transferase- Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wenglowsky, L. Ren, K. A. Ahrendt, E. R. Laird, I. Aliagas, B. Alicke A. J. Buckmelter, E. F. Choo, V. Dinkel, B. Feng, S. L. Gloor, S. E. Gould S. Gross, J. Gunzner-Toste, J. D. Hansen, G. Hatzivassiliou, B. Liu, K. Malesky, S. Mathieu, B. Newhouse, N. J. Raddatz, Y. Ran, S. Rana, N. Randolph, T. Risom, J. Rudolph, S. Savage, L. T. Selby, M. Shrag, K. Song, H. L. Sturgis, W. C. Voegtli, Z. Wen, B. S. Willis, R. D. Woessner, W. I. Wu, W. B. Young, J. Grina
Pyrazolopyridine Inhibitors Of B-Raf(V600E). Part 1: The Development Of Selective, Orally Bioavailable, And Efficacious Inhibitors.
Acs Med Chem Lett V. 2 342 2011
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-(6-AMINO-5-BROMOPYRIDIN-3-YL)-2,... (TV4a)
1b: N-(6-AMINO-5-BROMOPYRIDIN-3-YL)-2,... (TV4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TV4
1
Ligand/Ion
N-(6-AMINO-5-BROMOPYRIDIN-3-YL)-2,6-DIFLUORO-3-[(PROPYLSULFONYL)AMINO]BENZAMIDE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:481 , VAL A:482 , LYS A:483 , LEU A:505 , LEU A:514 , ILE A:527 , THR A:529 , GLN A:530 , TRP A:531 , CYS A:532 , PHE A:583 , ASP A:594 , PHE A:595 , GLY A:596
BINDING SITE FOR RESIDUE TV4 A 1
[
close Site info
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SAPs(SNPs)/Variants
(33, 33)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_018613 (R462I, chain A, )
02: VAR_018614 (I463S, chain A, )
03: VAR_018615 (G464E, chain A, )
04: VAR_018616 (G464V, chain A, )
05: VAR_035097 (F468S, chain A, )
06: VAR_018620 (G469A, chain A, )
07: VAR_018621 (G469E, chain A, )
08: VAR_018622 (G469R, chain A, )
09: VAR_040392 (G469V, chain A, )
10: VAR_026115 (L485F, chain A, )
11: VAR_026116 (K499E, chain A, )
12: VAR_058625 (K499N, chain A, )
13: VAR_026117 (E501G, chain A, )
14: VAR_026118 (E501K, chain A, )
15: VAR_058626 (L525P, chain A, )
16: VAR_058627 (W531C, chain A, )
17: VAR_065173 (N580D, chain A, )
18: VAR_026119 (N581D, chain A, )
19: VAR_040393 (N581S, chain A, )
20: VAR_018623 (E586K, chain A, )
21: VAR_018624 (D594G, chain A, )
22: VAR_018625 (F595L, chain A, )
23: VAR_018626 (G596R, chain A, )
24: VAR_035098 (G596V, chain A, )
25: VAR_018513 (L597R, chain A, )
26: VAR_018627 (L597V, chain A, )
27: VAR_058628 (T599R, chain A, )
28: VAR_018628 (V600D, chain A, )
29: VAR_018629 (V600E, chain A, )
30: VAR_018630 (K601E, chain A, )
31: VAR_058629 (K601Q, chain A, )
32: VAR_058630 (D638E, chain A, )
33: VAR_058631 (Q709R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_018613
R
462
I
BRAF_HUMAN
Disease (CRC)
---
A
R
462
I
02
UniProt
VAR_018614
I
463
S
BRAF_HUMAN
Disease (CRC)
---
A
I
463
S
03
UniProt
VAR_018615
G
464
E
BRAF_HUMAN
Disease (CRC)
---
A
G
464
E
04
UniProt
VAR_018616
G
464
V
BRAF_HUMAN
Unclassified
---
A
G
464
V
09
UniProt
VAR_035097
F
468
S
BRAF_HUMAN
Disease (CFC1)
---
A
F
468
S
10
UniProt
VAR_018620
G
469
A
BRAF_HUMAN
Disease (NHL)
---
A
G
469
A
11
UniProt
VAR_018621
G
469
E
BRAF_HUMAN
Disease (CFC1)
---
A
G
469
E
12
UniProt
VAR_018622
G
469
R
BRAF_HUMAN
Disease (NHL)
---
A
G
469
R
13
UniProt
VAR_040392
G
469
V
BRAF_HUMAN
Unclassified
---
A
G
469
V
14
UniProt
VAR_026115
L
485
F
BRAF_HUMAN
Disease (CFC1)
---
A
L
485
F
15
UniProt
VAR_026116
K
499
E
BRAF_HUMAN
Disease (CFC1)
---
A
K
499
E
16
UniProt
VAR_058625
K
499
N
BRAF_HUMAN
Disease (CFC1)
---
A
K
499
N
17
UniProt
VAR_026117
E
501
G
BRAF_HUMAN
Disease (CFC1)
---
A
E
501
G
18
UniProt
VAR_026118
E
501
K
BRAF_HUMAN
Disease (CFC1)
---
A
E
501
K
19
UniProt
VAR_058626
L
525
P
BRAF_HUMAN
Disease (CFC1)
---
A
L
525
P
20
UniProt
VAR_058627
W
531
C
BRAF_HUMAN
Disease (NS7)
---
A
W
531
C
21
UniProt
VAR_065173
N
580
D
BRAF_HUMAN
Disease (CFC1)
---
A
N
580
D
22
UniProt
VAR_026119
N
581
D
BRAF_HUMAN
Disease (CFC1)
---
A
N
581
D
23
UniProt
VAR_040393
N
581
S
BRAF_HUMAN
Unclassified
---
A
N
581
S
24
UniProt
VAR_018623
E
586
K
BRAF_HUMAN
Unclassified
---
A
E
586
K
25
UniProt
VAR_018624
D
594
G
BRAF_HUMAN
Disease (NHL)
---
A
D
594
G
26
UniProt
VAR_018625
F
595
L
BRAF_HUMAN
Unclassified
---
A
F
595
L
27
UniProt
VAR_018626
G
596
R
BRAF_HUMAN
Unclassified
---
A
G
596
R
28
UniProt
VAR_035098
G
596
V
BRAF_HUMAN
Disease (CFC1)
---
A
G
596
V
29
UniProt
VAR_018513
L
597
R
BRAF_HUMAN
Disease (LNCR)
---
A
L
597
R
30
UniProt
VAR_018627
L
597
V
BRAF_HUMAN
Disease (NS7)
---
A
L
597
V
31
UniProt
VAR_058628
T
599
R
BRAF_HUMAN
Disease (CFC1)
---
A
T
599
R
32
UniProt
VAR_018628
V
600
D
BRAF_HUMAN
Unclassified
---
A
V
600
D
33
UniProt
VAR_018629
V
600
E
BRAF_HUMAN
Disease (CRC)
---
A
V
600
E
34
UniProt
VAR_018630
K
601
E
BRAF_HUMAN
Disease (CRC)
---
A
K
601
E
35
UniProt
VAR_058629
K
601
Q
BRAF_HUMAN
Disease (CFC1)
---
A
K
601
Q
36
UniProt
VAR_058630
D
638
E
BRAF_HUMAN
Disease (CFC1)
---
A
D
638
E
37
UniProt
VAR_058631
Q
709
R
BRAF_HUMAN
Disease (CFC1)
---
A
Q
709
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:463-483)
2: PROTEIN_KINASE_ST (A:572-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
BRAF_HUMAN
463-483
1
A:463-483
-
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
BRAF_HUMAN
572-584
1
A:572-584
-
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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