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Asym. Unit
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Asym.Unit (1015 KB)
Biol.Unit 1 (1005 KB)
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(1)
Title
:
STRUCTURE OF THE F413E VARIANT OF E. COLI KATE
Authors
:
P. C. Loewen, V. Jha
Date
:
15 Sep 11 (Deposition) - 12 Oct 11 (Release) - 27 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Heme Orientation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Jha, L. J. Donald, P. C. Loewen
Mutation Of Phe413 To Tyr In Catalase Kate From Escherichia Coli Leads To Side Chain Damage And Main Chain Cleavage.
Arch. Biochem. Biophys. V. 525 207 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: CYSTEINESULFONIC ACID (OCSa)
2b: CYSTEINESULFONIC ACID (OCSb)
2c: CYSTEINESULFONIC ACID (OCSc)
2d: CYSTEINESULFONIC ACID (OCSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
OCS
4
Mod. Amino Acid
CYSTEINESULFONIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:214 , ILE A:274 , HIS A:275 , PHE A:391 , LEU A:407 , GLY A:410 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , ARG A:422 , HOH A:790 , HOH A:846 , HOH A:876 , ASP D:118
BINDING SITE FOR RESIDUE HEM A 760
2
AC2
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:214 , ILE B:274 , HIS B:275 , PHE B:391 , LEU B:407 , GLY B:410 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , HOH B:846 , HOH B:896 , HOH B:928 , ASP C:118
BINDING SITE FOR RESIDUE HEM B 760
3
AC3
SOFTWARE
ASP B:118 , ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:214 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , HOH C:871 , HOH C:929 , HOH C:964
BINDING SITE FOR RESIDUE HEM C 760
4
AC4
SOFTWARE
ASP A:118 , ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:214 , ILE D:274 , HIS D:275 , PHE D:391 , LEU D:407 , GLY D:410 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , ARG D:422 , HOH D:1295 , HOH D:1353 , HOH D:1388
BINDING SITE FOR RESIDUE HEM D 760
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:77-568,B:77-568,C:77-568,D:77-56...)
2: CATALASE_2 (A:117-133,B:117-133,C:117-133,D:11...)
3: CATALASE_1 (A:411-419,B:411-419,C:411-419,D:41...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATE_ECOLI
77-568
4
A:77-568
B:77-568
C:77-568
D:77-568
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATE_ECOLI
117-133
4
A:117-133
B:117-133
C:117-133
D:117-133
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATE_ECOLI
411-419
4
A:411-419
B:411-419
C:411-419
D:411-419
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ttwa2 (A:598-753)
1b: SCOP_d3ttwb2 (B:598-753)
1c: SCOP_d3ttwc2 (C:598-753)
1d: SCOP_d3ttwd2 (D:598-753)
2a: SCOP_d3ttwa1 (A:28-597)
2b: SCOP_d3ttwc1 (C:28-597)
2c: SCOP_d3ttwd1 (D:28-597)
2d: SCOP_d3ttwb1 (B:28-597)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Escherichia coli [TaxId: 562]
(6)
1a
d3ttwa2
A:598-753
1b
d3ttwb2
B:598-753
1c
d3ttwc2
C:598-753
1d
d3ttwd2
D:598-753
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Escherichia coli [TaxId: 562]
(5)
2a
d3ttwa1
A:28-597
2b
d3ttwc1
C:28-597
2c
d3ttwd1
D:28-597
2d
d3ttwb1
B:28-597
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CATH Domains
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Pfam Domains
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