PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3TT1
Asym. Unit
Info
Asym.Unit (604 KB)
Biol.Unit 1 (300 KB)
Biol.Unit 2 (302 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF LEUT IN THE OUTWARD-OPEN CONFORMATION IN COMPLEX WITH FAB
Authors
:
H. Krishnamurthy, E. Gouaux
Date
:
13 Sep 11 (Deposition) - 04 Jan 12 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,H,I,L,M
Biol. Unit 1: A,I,M (1x)
Biol. Unit 2: B,H,L (1x)
Keywords
:
Leut Fold, Transporter, Plasma Membrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Krishnamurthy, E. Gouaux
X-Ray Structures Of Leut In Substrate-Free Outward-Open And Apo Inward-Open States.
Nature V. 481 469 2012
[
close entry info
]
Hetero Components
(2, 9)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
2a: 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TE... (SOGa)
2b: 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TE... (SOGb)
2c: 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TE... (SOGc)
2d: 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TE... (SOGd)
2e: 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TE... (SOGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
4
Ligand/Ion
SODIUM ION
2
SOG
5
Ligand/Ion
2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:22 , ASN A:27 , THR A:254 , ASN A:286
BINDING SITE FOR RESIDUE NA A 601
2
AC2
SOFTWARE
GLY A:20 , VAL A:23 , ALA A:351 , THR A:354 , SER A:355
BINDING SITE FOR RESIDUE NA A 602
3
AC3
SOFTWARE
PRO A:164 , LEU A:166 , TYR A:169 , PHE A:395 , SOG B:520
BINDING SITE FOR RESIDUE SOG A 520
4
AC4
SOFTWARE
LEU A:495 , GLY B:492
BINDING SITE FOR RESIDUE SOG A 521
5
AC5
SOFTWARE
LYS A:376 , HIS A:377
BINDING SITE FOR RESIDUE SOG A 522
6
AC6
SOFTWARE
ALA B:22 , ASN B:27 , THR B:254 , ASN B:286
BINDING SITE FOR RESIDUE NA B 601
7
AC7
SOFTWARE
GLY B:20 , VAL B:23 , ALA B:351 , THR B:354 , SER B:355
BINDING SITE FOR RESIDUE NA B 602
8
AC8
SOFTWARE
ILE A:161 , LEU A:162 , LYS A:163 , PHE A:395 , SOG A:520 , TRP B:484 , SOG B:521 , LYS M:24 , ASP M:74
BINDING SITE FOR RESIDUE SOG B 520
9
AC9
SOFTWARE
TRP B:481 , TRP B:484 , SOG B:520 , SER M:71 , ASP M:74
BINDING SITE FOR RESIDUE SOG B 521
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3tt1l1 (L:1-111)
1b: SCOP_d3tt1m1 (M:1-111)
2a: SCOP_d3tt1l2 (L:112-215)
2b: SCOP_d3tt1m2 (M:112-215)
3a: SCOP_d3tt1a_ (A:)
3b: SCOP_d3tt1b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3tt1l1
L:1-111
1b
d3tt1m1
M:1-111
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d3tt1l2
L:112-215
2b
d3tt1m2
M:112-215
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
SNF-like
(42)
Superfamily
:
SNF-like
(42)
Family
:
SNF-like
(42)
Protein domain
:
Na(+):neurotransmitter symporter homologue LeuT
(35)
Aquifex aeolicus [TaxId: 63363]
(35)
3a
d3tt1a_
A:
3b
d3tt1b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain H
Chain I
Chain L
Chain M
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (604 KB)
Header - Asym.Unit
Biol.Unit 1 (300 KB)
Header - Biol.Unit 1
Biol.Unit 2 (302 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3TT1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
