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3TT0
Biol. Unit 2
Info
Asym.Unit (217 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
CO-STRUCTURE OF FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE DOMAIN WITH 3-(2,6-DICHLORO-3,5-DIMETHOXY-PHENYL)-1-{6-[4-(4-ETHYL-PIPERAZIN-1-YL)-PHENYLAMINO]-PYRIMIDIN-4-YL}-1-METHYL-UREA (BGJ398)
Authors
:
D. E. Bussiere, J. M. Murray, W. Shu
Date
:
13 Sep 11 (Deposition) - 13 Jun 12 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase Domain, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Guagnano, P. Furet, C. Spanka, V. Bordas, M. Le Douget, C. Stamm, J. Brueggen, M. R. Jensen, C. Schnell, H. Schmid, M. Wartmann, J. Berghausen, P. Drueckes, A. Zimmerlin, D. Bussiere, J. Murray, D. Graus Porta
Discovery Of 3-(2, 6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl- Piperazin-1-Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Nvp-Bgj398), A Potent And Selective Inhibitor Of The Fibroblast Growth Factor Receptor Family Of Receptor Tyrosine Kinase.
J. Med. Chem. V. 54 7066 2011
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 3-(2,6-DICHLORO-3,5-DIMETHOXYPHENY... (07Ja)
1b: 3-(2,6-DICHLORO-3,5-DIMETHOXYPHENY... (07Jb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
07J
1
Ligand/Ion
3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-(6-{[4-(4-ETHYLPIPERAZIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)-1-METHYLUREA
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
HOH A:224 , ARG A:577 , SER A:584 , GLY A:698 , SER A:699 , HIS B:717
BINDING SITE FOR RESIDUE SO4 A 2
2
AC4
SOFTWARE
HOH A:229 , LYS A:721 , CYS A:725 , ASN A:727 , LYS B:721 , ASN B:724
BINDING SITE FOR RESIDUE SO4 A 4
3
AC5
SOFTWARE
HOH B:110 , HOH B:284 , HOH B:346 , LEU B:484 , VAL B:492 , ALA B:512 , GLU B:531 , MET B:535 , VAL B:561 , GLU B:562 , ALA B:564 , GLY B:567 , GLU B:571 , LEU B:630 , ALA B:640 , ASP B:641
BINDING SITE FOR RESIDUE 07J B 1
4
AC6
SOFTWARE
HIS A:589 , LYS B:542 , ARG B:609
BINDING SITE FOR RESIDUE SO4 B 3
5
AC7
SOFTWARE
LYS B:566 , TYR B:572 , ARG B:576
BINDING SITE FOR RESIDUE GOL B 790
6
AC8
SOFTWARE
HIS B:541 , GLU B:612 , TYR B:613
BINDING SITE FOR RESIDUE GOL B 2
7
AC9
SOFTWARE
ARG B:577 , GLY B:698 , SER B:699
BINDING SITE FOR RESIDUE GOL B 791
[
close Site info
]
SAPs(SNPs)/Variants
(29, 29)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_069292 (R470L, chain B, )
02: VAR_069956 (P483T, chain B, )
03: VAR_070853 (G490R, chain B, )
04: VAR_030995 (A520T, chain B, )
05: VAR_030996 (I538V, chain B, )
06: VAR_017889 (V607M, chain B, )
07: VAR_069293 (K618N, chain B, )
08: VAR_030997 (H621R, chain B, )
09: VAR_030998 (R622G, chain B, )
10: VAR_030999 (R622Q, chain B, )
11: VAR_070854 (D623Y, chain B, )
12: VAR_071460 (R627T, chain B, )
13: VAR_070855 (N628K, chain B, )
14: VAR_042203 (V664L, chain B, )
15: VAR_017890 (W666R, chain B, )
16: VAR_069957 (E670K, chain B, )
17: VAR_069294 (A671P, chain B, )
18: VAR_031000 (S685F, chain B, )
19: VAR_031001 (G687R, chain B, )
20: VAR_069958 (E692G, chain B, )
21: VAR_031002 (I693F, chain B, )
22: VAR_031003 (G703R, chain B, )
23: VAR_031004 (G703S, chain B, )
24: VAR_017891 (M719R, chain B, )
25: VAR_031005 (P722H, chain B, )
26: VAR_031006 (P722S, chain B, )
27: VAR_031007 (N724K, chain B, )
28: VAR_070856 (C725Y, chain B, )
29: VAR_031008 (P745S, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069292
R
470
L
FGFR1_HUMAN
Disease (HH2)
---
B
R
470
L
02
UniProt
VAR_069956
P
483
T
FGFR1_HUMAN
Disease (HH2)
---
B
P
483
T
03
UniProt
VAR_070853
G
490
R
FGFR1_HUMAN
Disease (HRTFDS)
---
B
G
490
R
04
UniProt
VAR_030995
A
520
T
FGFR1_HUMAN
Disease (HH2)
---
B
A
520
T
05
UniProt
VAR_030996
I
538
V
FGFR1_HUMAN
Disease (HH2)
---
B
I
538
V
06
UniProt
VAR_017889
V
607
M
FGFR1_HUMAN
Disease (HH2)
---
B
V
607
M
07
UniProt
VAR_069293
K
618
N
FGFR1_HUMAN
Disease (HH2)
---
B
K
618
N
08
UniProt
VAR_030997
H
621
R
FGFR1_HUMAN
Disease (HH2)
---
B
H
621
R
09
UniProt
VAR_030998
R
622
G
FGFR1_HUMAN
Disease (HH2)
---
B
R
622
G
10
UniProt
VAR_030999
R
622
Q
FGFR1_HUMAN
Disease (HH2)
---
B
R
622
Q
11
UniProt
VAR_070854
D
623
Y
FGFR1_HUMAN
Disease (HRTFDS)
---
B
D
623
Y
12
UniProt
VAR_071460
R
627
T
FGFR1_HUMAN
Disease (HRTFDS)
---
B
R
627
T
13
UniProt
VAR_070855
N
628
K
FGFR1_HUMAN
Disease (HRTFDS)
---
B
N
628
K
14
UniProt
VAR_042203
V
664
L
FGFR1_HUMAN
Unclassified
---
B
V
664
L
15
UniProt
VAR_017890
W
666
R
FGFR1_HUMAN
Disease (HH2)
---
B
W
666
R
16
UniProt
VAR_069957
E
670
K
FGFR1_HUMAN
Disease (HH2)
---
B
E
670
K
17
UniProt
VAR_069294
A
671
P
FGFR1_HUMAN
Disease (HH2)
---
B
A
671
P
18
UniProt
VAR_031000
S
685
F
FGFR1_HUMAN
Disease (HH2)
---
B
S
685
F
19
UniProt
VAR_031001
G
687
R
FGFR1_HUMAN
Disease (HH2)
---
B
G
687
R
20
UniProt
VAR_069958
E
692
G
FGFR1_HUMAN
Disease (HH2)
---
B
E
692
G
21
UniProt
VAR_031002
I
693
F
FGFR1_HUMAN
Disease (HH2)
---
B
I
693
F
22
UniProt
VAR_031003
G
703
R
FGFR1_HUMAN
Disease (HH2)
---
B
G
703
R
23
UniProt
VAR_031004
G
703
S
FGFR1_HUMAN
Disease (HH2)
---
B
G
703
S
24
UniProt
VAR_017891
M
719
R
FGFR1_HUMAN
Disease (HH2)
---
B
M
719
R
25
UniProt
VAR_031005
P
722
H
FGFR1_HUMAN
Disease (HH2)
---
B
P
722
H
26
UniProt
VAR_031006
P
722
S
FGFR1_HUMAN
Disease (HH2)
---
B
P
722
S
27
UniProt
VAR_031007
N
724
K
FGFR1_HUMAN
Disease (HH2)
---
B
N
724
K
28
UniProt
VAR_070856
C
725
Y
FGFR1_HUMAN
Disease (HRTFDS)
---
B
C
725
Y
29
UniProt
VAR_031008
P
745
S
FGFR1_HUMAN
Disease (HH2)
---
B
P
745
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:484-514)
2: PROTEIN_KINASE_TYR (B:619-631)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
FGFR1_HUMAN
484-514
1
-
B:484-514
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
FGFR1_HUMAN
619-631
1
-
B:619-631
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3tt0a_ (A:)
1b: SCOP_d3tt0b_ (B:)
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Classes
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Fibroblast growth factor receptor 1
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3tt0a_
A:
1b
d3tt0b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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