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3TSV
Asym. Unit
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Asym.Unit (20 KB)
Biol.Unit 1 (16 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE THIRD PDZ DOMAIN OF THE HUMAN ZO-1 MAGUK PROTEIN
Authors
:
J. Nomme, A. Lavie
Date
:
13 Sep 11 (Deposition) - 12 Oct 11 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pdz, Scaffolding, Jam, Tight Junction, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Nomme, A. S. Fanning, M. Caffrey, M. F. Lye, J. M. Anderson, A. Lavie
The Src Homology 3 Domain Is Required For Junctional Adhesion Molecule Binding To The Third Pdz Domain Of The Scaffolding Protein Zo-1.
J. Biol. Chem. V. 286 43352 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025153 (N471S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025153
N
471
S
ZO1_HUMAN
Polymorphism
2229517
A
N
471
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|-|A:421-502)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
ZO1_HUMAN
23-110
186-264
421-502
1
-
-
A:421-502
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Exons
(3, 3)
Info
All Exons
Exon 1.16 (A:420-469)
Exon 1.17 (A:470-506)
Exon 1.18 (A:506-512)
View:
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All Exon Boundaries
1: Boundary 1.15a/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000346128
2c
ENSE00001822067
chr15:
30114682-30114205
478
ZO1_HUMAN
1-9
9
0
-
-
1.5a
ENST00000346128
5a
ENSE00001658526
chr15:
30092905-30092849
57
ZO1_HUMAN
10-28
19
0
-
-
1.7
ENST00000346128
7
ENSE00001419179
chr15:
30065560-30065436
125
ZO1_HUMAN
29-70
42
0
-
-
1.8
ENST00000346128
8
ENSE00001144945
chr15:
30064369-30064267
103
ZO1_HUMAN
70-104
35
0
-
-
1.9
ENST00000346128
9
ENSE00000673044
chr15:
30058745-30058469
277
ZO1_HUMAN
105-197
93
0
-
-
1.10
ENST00000346128
10
ENSE00001001849
chr15:
30054641-30054538
104
ZO1_HUMAN
197-231
35
0
-
-
1.11
ENST00000346128
11
ENSE00000673042
chr15:
30053972-30053804
169
ZO1_HUMAN
232-288
57
0
-
-
1.12
ENST00000346128
12
ENSE00001001840
chr15:
30053489-30053342
148
ZO1_HUMAN
288-337
50
0
-
-
1.14b
ENST00000346128
14b
ENSE00001001852
chr15:
30034985-30034846
140
ZO1_HUMAN
337-384
48
0
-
-
1.15a
ENST00000346128
15a
ENSE00001493913
chr15:
30033640-30033535
106
ZO1_HUMAN
384-419
36
0
-
-
1.16
ENST00000346128
16
ENSE00001001854
chr15:
30029618-30029468
151
ZO1_HUMAN
419-469
51
1
A:420-469
50
1.17
ENST00000346128
17
ENSE00000672950
chr15:
30026586-30026478
109
ZO1_HUMAN
470-506
37
1
A:470-506
37
1.18
ENST00000346128
18
ENSE00000912744
chr15:
30025517-30025298
220
ZO1_HUMAN
506-579
74
1
A:506-512
7
1.19b
ENST00000346128
19b
ENSE00000912743
chr15:
30025019-30024835
185
ZO1_HUMAN
579-641
63
0
-
-
1.20a
ENST00000346128
20a
ENSE00001001836
chr15:
30024732-30024637
96
ZO1_HUMAN
641-673
33
0
-
-
1.21
ENST00000346128
21
ENSE00000912740
chr15:
30020223-30020141
83
ZO1_HUMAN
673-700
28
0
-
-
1.22
ENST00000346128
22
ENSE00000912739
chr15:
30019195-30018985
211
ZO1_HUMAN
701-771
71
0
-
-
1.23
ENST00000346128
23
ENSE00000912738
chr15:
30018683-30018583
101
ZO1_HUMAN
771-804
34
0
-
-
1.24
ENST00000346128
24
ENSE00000672942
chr15:
30012912-30012562
351
ZO1_HUMAN
805-921
117
0
-
-
1.25
ENST00000346128
25
ENSE00000672941
chr15:
30012220-30011981
240
ZO1_HUMAN
922-1001
80
0
-
-
1.26
ENST00000346128
26
ENSE00000672940
chr15:
30011342-30010470
873
ZO1_HUMAN
1002-1292
291
0
-
-
1.27
ENST00000346128
27
ENSE00000672939
chr15:
30010322-30010225
98
ZO1_HUMAN
1293-1325
33
0
-
-
1.28
ENST00000346128
28
ENSE00001001846
chr15:
30009042-30008815
228
ZO1_HUMAN
1325-1401
77
0
-
-
1.29
ENST00000346128
29
ENSE00001001851
chr15:
30003204-30003035
170
ZO1_HUMAN
1401-1458
58
0
-
-
1.30
ENST00000346128
30
ENSE00001001837
chr15:
30001240-30000763
478
ZO1_HUMAN
1458-1617
160
0
-
-
1.31
ENST00000346128
31
ENSE00001001845
chr15:
29997949-29997732
218
ZO1_HUMAN
1617-1690
74
0
-
-
1.32a
ENST00000346128
32a
ENSE00001001860
chr15:
29996509-29996426
84
ZO1_HUMAN
1690-1718
29
0
-
-
1.33b
ENST00000346128
33b
ENSE00001541183
chr15:
29993893-29991571
2323
ZO1_HUMAN
1718-1748
31
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d3tsva_ (A:)
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All beta proteins
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Fold
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PDZ domain-like
(299)
Superfamily
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PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d3tsva_
A:
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