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Asym. Unit
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Asym.Unit (87 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
STRUCTURE OF THE CANCER ASSOCIATED RAB25 PROTEIN IN COMPLEX WITH FIP2
Authors
:
S. Oda, P. Y. Lall, M. W. Mccaffrey, A. R. Khan
Date
:
13 Sep 11 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ras Gtpase Fold (Rab25), Vesicle Trafficking, Endosome, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Oda, P. Y. Lall, M. W. Mccaffrey, A. R. Khan
Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2
To Be Published
[
close entry info
]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
GOL
5
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:26 , THR A:44 , GNP A:201 , HOH A:368 , HOH A:377
BINDING SITE FOR RESIDUE MG A 200
02
AC2
SOFTWARE
SER A:21 , GLY A:22 , VAL A:23 , GLY A:24 , LYS A:25 , THR A:26 , ASN A:27 , PHE A:37 , SER A:38 , HIS A:39 , ASP A:40 , SER A:41 , THR A:43 , THR A:44 , ALA A:69 , GLY A:70 , ASN A:125 , LYS A:126 , ASP A:128 , LEU A:129 , SER A:155 , ALA A:156 , LEU A:157 , MG A:200 , HOH A:329 , HOH A:344 , HOH A:359 , HOH A:368 , HOH A:377
BINDING SITE FOR RESIDUE GNP A 201
03
AC3
SOFTWARE
ASN A:35 , GLU A:36 , PHE A:37 , ASP B:158 , THR B:160
BINDING SITE FOR RESIDUE GOL A 202
04
AC4
SOFTWARE
ILE A:45 , GLY A:46 , LEU A:71 , ARG A:73 , ARG A:75 , ILE D:481 , ASP D:482
BINDING SITE FOR RESIDUE GOL A 203
05
AC5
SOFTWARE
ILE A:18 , ALA A:69 , LEU A:71 , ARG A:75 , THR A:78 , TYR A:81 , TYR A:82 , TRP A:106 , GLU A:109
BINDING SITE FOR RESIDUE GOL A 204
06
AC6
SOFTWARE
GLU A:163 , LEU A:164 , GLU A:167 , HOH A:300 , GLU B:138
BINDING SITE FOR RESIDUE PO4 A 205
07
AC7
SOFTWARE
TYR A:100 , ALA A:101 , GLU A:104
BINDING SITE FOR RESIDUE PO4 A 206
08
AC8
SOFTWARE
THR B:26 , THR B:44 , GNP B:201 , HOH B:352 , HOH B:353
BINDING SITE FOR RESIDUE MG B 200
09
AC9
SOFTWARE
SER B:21 , GLY B:22 , VAL B:23 , GLY B:24 , LYS B:25 , THR B:26 , ASN B:27 , PHE B:37 , SER B:38 , HIS B:39 , SER B:41 , THR B:43 , THR B:44 , ALA B:69 , GLY B:70 , ASN B:125 , LYS B:126 , ASP B:128 , LEU B:129 , SER B:155 , ALA B:156 , LEU B:157 , MG B:200 , HOH B:349 , HOH B:352 , HOH B:353
BINDING SITE FOR RESIDUE GNP B 201
10
BC1
SOFTWARE
ILE B:45 , GLY B:46 , ARG B:73 , ARG B:75 , GLU C:478 , ILE C:481 , ASP C:482
BINDING SITE FOR RESIDUE GOL B 202
11
BC2
SOFTWARE
ILE B:18 , ALA B:69 , LEU B:71 , ARG B:75 , THR B:78 , TRP B:106 , GLU B:109
BINDING SITE FOR RESIDUE GOL B 203
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(6, 12)
Info
All Exons
Exon 1.6c (C:449-502 | D:449-502)
Exon 2.1a (A:10-15 | B:11-15)
Exon 2.2a (A:15-80 | B:15-80)
Exon 2.3b (A:80-145 | B:80-145)
Exon 2.4a (A:145-172 | B:145-172)
Exon 2.5b (A:172-178 | B:172-177)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6c
2: Boundary 1.6c/-
3: Boundary -/2.1a
4: Boundary 2.1a/2.2a
5: Boundary 2.2a/2.3b
6: Boundary 2.3b/2.4a
7: Boundary 2.4a/2.5b
8: Boundary 2.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000355624
1
ENSE00001123753
chr10:
119806114-119805322
793
RFIP2_HUMAN
1-118
118
0
-
-
1.2a
ENST00000355624
2a
ENSE00001095234
chr10:
119800076-119799634
443
RFIP2_HUMAN
118-266
149
0
-
-
1.3a
ENST00000355624
3a
ENSE00001133266
chr10:
119798951-119798483
469
RFIP2_HUMAN
266-422
157
0
-
-
1.5
ENST00000355624
5
ENSE00000987833
chr10:
119774621-119774576
46
RFIP2_HUMAN
422-437
16
0
-
-
1.6c
ENST00000355624
6c
ENSE00001952026
chr10:
119768736-119764427
4310
RFIP2_HUMAN
438-512
75
2
C:449-502
D:449-502
54
54
2.1a
ENST00000361084
1a
ENSE00001842111
chr1:
156030951-156031234
284
RAB25_HUMAN
1-15
15
2
A:10-15
B:11-15
6
5
2.2a
ENST00000361084
2a
ENSE00000855863
chr1:
156035702-156035897
196
RAB25_HUMAN
15-80
66
2
A:15-80
B:15-80
66
66
2.3b
ENST00000361084
3b
ENSE00000788616
chr1:
156038061-156038254
194
RAB25_HUMAN
80-145
66
2
A:80-145
B:80-145
66
66
2.4a
ENST00000361084
4a
ENSE00000788617
chr1:
156039462-156039542
81
RAB25_HUMAN
145-172
28
2
A:145-172
B:145-172
28
28
2.5b
ENST00000361084
5b
ENSE00001862439
chr1:
156039951-156040295
345
RAB25_HUMAN
172-213
42
2
A:172-178
B:172-177
7
6
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3tsoa_ (A:)
1b: SCOP_d3tsob_ (B:)
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Classes
(
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(
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d3tsoa_
A:
1b
d3tsob_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Sidechain
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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