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3TPX
Biol. Unit 3
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Asym.Unit (114 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (37 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH A TRIFLUOROMETHYLATED D-PEPTIDE INHIBITOR
Authors
:
X. Wu, M. Pazgier
Date
:
08 Sep 11 (Deposition) - 20 Jun 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Ligase-Ligase Inhibitor Complex, Mdm2-D-Peptide Inhibitor Complex, P53-Binding Domain Of Mdm2-D-Peptide Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Zhan, L. Zhao, X. Wei, X. Wu, X. Chen, W. Yuan, W. Y. Lu, M. Pazgier, W. L
An Ultrahigh Affinity D-Peptide Antagonist Of Mdm2.
J. Med. Chem. V. 55 6237 2012
[
close entry info
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Hetero Components
(10, 12)
Info
All Hetero Components
01a: ACETATE ION (ACTa)
01b: ACETATE ION (ACTb)
01c: ACETATE ION (ACTc)
01d: ACETATE ION (ACTd)
02a: CHLORIDE ION (CLa)
02b: CHLORIDE ION (CLb)
02c: CHLORIDE ION (CLc)
02d: CHLORIDE ION (CLd)
02e: CHLORIDE ION (CLe)
03a: D-ALANINE (DALa)
03b: D-ALANINE (DALb)
03c: D-ALANINE (DALc)
03d: D-ALANINE (DALd)
03e: D-ALANINE (DALe)
03f: D-ALANINE (DALf)
04a: D-ARGININE (DARa)
04b: D-ARGININE (DARb)
04c: D-ARGININE (DARc)
05a: D-GLUTAMIC ACID (DGLa)
05b: D-GLUTAMIC ACID (DGLb)
05c: D-GLUTAMIC ACID (DGLc)
06a: D-LEUCINE (DLEa)
06b: D-LEUCINE (DLEb)
06c: D-LEUCINE (DLEc)
06d: D-LEUCINE (DLEd)
06e: D-LEUCINE (DLEe)
06f: D-LEUCINE (DLEf)
07a: D-LYSINE (DLYa)
07b: D-LYSINE (DLYb)
07c: D-LYSINE (DLYc)
08a: D-ASPARAGINE (DSGa)
08b: D-ASPARAGINE (DSGb)
08c: D-ASPARAGINE (DSGc)
09a: D-TRYPTOPHAN (DTRa)
09b: D-TRYPTOPHAN (DTRb)
09c: D-TRYPTOPHAN (DTRc)
10a: D-TYROSINE (DTYa)
10b: D-TYROSINE (DTYb)
10c: D-TYROSINE (DTYc)
11a: SULFATE ION (SO4a)
11b: SULFATE ION (SO4b)
11c: SULFATE ION (SO4c)
12a: 4-(TRIFLUOROMETHYL)-D-PHENYLALANIN... (TDFa)
12b: 4-(TRIFLUOROMETHYL)-D-PHENYLALANIN... (TDFb)
12c: 4-(TRIFLUOROMETHYL)-D-PHENYLALANIN... (TDFc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DAL
2
OTHER
D-ALANINE
4
DAR
1
OTHER
D-ARGININE
5
DGL
1
OTHER
D-GLUTAMIC ACID
6
DLE
2
OTHER
D-LEUCINE
7
DLY
1
OTHER
D-LYSINE
8
DSG
1
OTHER
D-ASPARAGINE
9
DTR
1
OTHER
D-TRYPTOPHAN
10
DTY
1
OTHER
D-TYROSINE
11
SO4
-1
Ligand/Ion
SULFATE ION
12
TDF
1
OTHER
4-(TRIFLUOROMETHYL)-D-PHENYLALANINE
[
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Sites
(6, 6)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASN C:79 , HOH C:328 , LYS E:51 , ARG E:97
BINDING SITE FOR RESIDUE SO4 C 201
2
AC9
SOFTWARE
LYS E:98
BINDING SITE FOR RESIDUE CL E 201
3
BC1
SOFTWARE
GLN E:71 , GLN E:72 , HIS E:73 , CL E:203 , HOH E:346
BINDING SITE FOR RESIDUE CL E 202
4
BC2
SOFTWARE
CL E:202
BINDING SITE FOR RESIDUE CL E 203
5
BC3
SOFTWARE
LYS E:31 , PRO E:32 , LEU E:33 , HOH E:318
BINDING SITE FOR RESIDUE ACT E 204
6
BC6
SOFTWARE
SER C:78 , ASN C:79 , ASP C:80 , LEU C:81 , ASP C:84 , LEU E:54 , PHE E:55 , LEU E:57 , GLY E:58 , ILE E:61 , MET E:62 , TYR E:67 , GLN E:72 , HIS E:73 , PHE E:91 , VAL E:93 , LYS E:94 , GLU E:95 , HIS E:96 , ARG E:97 , ILE E:99 , TYR E:100 , HOH E:302 , HOH E:306 , HOH F:101 , HOH F:102 , HOH F:103 , HOH F:105 , HOH F:106
BINDING SITE FOR CHAIN F OF D-PEPTIDE INHIBITOR DPMI-DELTA
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (114 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (37 KB)
Header - Biol.Unit 3
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