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3TOR
Biol. Unit 2
Info
Asym.Unit (357 KB)
Biol.Unit 1 (174 KB)
Biol.Unit 2 (175 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ESCHERICHIA COLI NRFA WITH EUROPIUM BOUND
Authors
:
C. W. J. Lockwood, T. A. Clarke, J. N. Butt, A. M. Hemmings, D. J. Richards
Date
:
06 Sep 11 (Deposition) - 07 Dec 11 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Multihaem Cytochrome, Decaheme, Reductase, Electron Transport, Iron, Metal-Binding, Oxidoreductase, Nitrite, Calcium Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Lockwood, T. A. Clarke, J. N. Butt, A. M. Hemmings, D. J. Richardso
Characterization Of The Active Site And Calcium Binding In Cytochrome C Nitrite Reductases.
Biochem. Soc. Trans. V. 39 1871 2011
[
close entry info
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: EUROPIUM ION (EUa)
2b: EUROPIUM ION (EUb)
2c: EUROPIUM ION (EUc)
2d: EUROPIUM ION (EUd)
2e: EUROPIUM ION (EUe)
2f: EUROPIUM ION (EUf)
2g: EUROPIUM ION (EUg)
2h: EUROPIUM ION (EUh)
2i: EUROPIUM ION (EUi)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
3s: HEME C (HECs)
3t: HEME C (HECt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EU
-1
Ligand/Ion
EUROPIUM ION
3
HEC
10
Ligand/Ion
HEME C
[
close Hetero Component info
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Sites
(17, 17)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
GLU B:215 , TYR B:216 , LYS B:261 , GLN B:263 , HOH B:566 , HOH B:635
BINDING SITE FOR RESIDUE CA B 1
02
BC2
SOFTWARE
HEC B:5 , HEC B:6 , PRO B:91 , HOH B:541 , HOH B:562 , HOH B:686 , HOH B:690 , HOH B:1976
BINDING SITE FOR RESIDUE EU B 2
03
BC3
SOFTWARE
HEC B:5 , HOH B:11 , HOH B:22 , TYR B:88 , ASN B:89 , PRO B:91 , ASP B:100 , THR B:104 , ARG B:106 , THR B:107 , CYS B:122 , CYS B:125 , LYS B:126 , CYS B:212 , HIS B:213 , TYR B:216 , PHE B:218 , HIS B:264 , HIS B:388 , HOH B:495 , HOH B:504 , HOH B:509 , HOH B:527 , HOH B:533 , HOH B:557 , HOH B:829
BINDING SITE FOR RESIDUE HEC B 3
04
BC4
SOFTWARE
HEC B:5 , HIS B:49 , GLN B:52 , TYR B:53 , TRP B:56 , GLY B:159 , CYS B:160 , CYS B:163 , HIS B:164 , PHE B:171 , GLY B:174 , ARG B:201 , GLN B:205 , ILE B:283 , MET B:287 , LYS B:289 , TYR B:298 , THR B:299 , HIS B:301 , HOH B:529 , HOH B:570 , HOH B:1105
BINDING SITE FOR RESIDUE HEC B 4
05
BC5
SOFTWARE
EU B:2 , HEC B:3 , HEC B:4 , HEC B:6 , GLN B:62 , PRO B:91 , ARG B:92 , GLY B:93 , HIS B:94 , PHE B:96 , ALA B:97 , ASP B:100 , CYS B:125 , LYS B:126 , LEU B:158 , ARG B:182 , VAL B:208 , CYS B:209 , CYS B:212 , HIS B:213 , ILE B:283 , HIS B:286 , MET B:287 , ILE B:303 , GLY B:304 , HOH B:562 , HOH B:567 , HOH B:690 , HOH B:1350
BINDING SITE FOR RESIDUE HEC B 5
06
BC6
SOFTWARE
EU B:2 , HEC B:5 , HEC B:7 , PRO B:91 , HIS B:213 , GLU B:266 , TRP B:270 , HIS B:275 , VAL B:280 , THR B:281 , CYS B:282 , CYS B:285 , HIS B:286 , ASN B:305 , PRO B:306 , PHE B:307 , HIS B:388 , HIS B:391 , MET B:392 , HIS B:393 , HOH B:492 , HOH B:686 , HOH B:687 , HOH B:690 , HOH B:823 , HOH B:1433
BINDING SITE FOR RESIDUE HEC B 6
07
BC7
SOFTWARE
HEC B:6 , ILE B:274 , HIS B:275 , VAL B:280 , ASP B:284 , PRO B:306 , PHE B:307 , THR B:313 , CYS B:314 , CYS B:317 , HIS B:318 , ARG B:332 , MET B:392 , EU B:479 , EU B:480 , HOH B:644 , HOH B:992 , HEC C:7 , HIS C:318 , GLN C:320 , GLU C:396
BINDING SITE FOR RESIDUE HEC B 7
08
BC8
SOFTWARE
HEC B:7 , HOH B:1718 , HEC C:7 , HOH C:611
BINDING SITE FOR RESIDUE EU B 479
09
BC9
SOFTWARE
HEC B:7 , GLU B:396 , HEC C:7 , GLU C:396
BINDING SITE FOR RESIDUE EU B 480
10
CC1
SOFTWARE
GLU C:215 , TYR C:216 , LYS C:261 , GLN C:263 , HOH C:509 , HOH C:583
BINDING SITE FOR RESIDUE CA C 1
11
CC2
SOFTWARE
HEC C:5 , HEC C:6 , PRO C:91 , HOH C:645 , HOH C:858 , HOH C:1356 , HOH C:1509 , HOH C:1793
BINDING SITE FOR RESIDUE EU C 2
12
CC3
SOFTWARE
HEC C:5 , TYR C:88 , ASN C:89 , PRO C:91 , ASP C:100 , THR C:104 , ARG C:106 , THR C:107 , LEU C:118 , CYS C:122 , CYS C:125 , LYS C:126 , CYS C:212 , HIS C:213 , TYR C:216 , HIS C:264 , HIS C:388 , HOH C:486 , HOH C:488 , HOH C:500 , HOH C:505 , HOH C:514 , HOH C:515 , HOH C:537 , HOH C:634 , HOH C:1045
BINDING SITE FOR RESIDUE HEC C 3
13
CC4
SOFTWARE
HEC C:5 , HIS C:49 , GLN C:52 , TRP C:56 , GLY C:159 , CYS C:160 , CYS C:163 , HIS C:164 , PHE C:171 , GLY C:174 , PRO C:176 , LEU C:178 , ARG C:201 , GLN C:205 , ILE C:283 , LYS C:289 , TYR C:298 , THR C:299 , HIS C:301 , HOH C:539 , HOH C:1720
BINDING SITE FOR RESIDUE HEC C 4
14
CC5
SOFTWARE
EU C:2 , HEC C:3 , HEC C:4 , HEC C:6 , GLN C:62 , PRO C:91 , ARG C:92 , GLY C:93 , HIS C:94 , PHE C:96 , ALA C:97 , ASP C:100 , CYS C:125 , LYS C:126 , LEU C:158 , VAL C:208 , CYS C:209 , CYS C:212 , HIS C:213 , ILE C:283 , HIS C:286 , MET C:287 , ILE C:303 , HOH C:1509
BINDING SITE FOR RESIDUE HEC C 5
15
CC6
SOFTWARE
EU C:2 , HEC C:5 , HEC C:7 , PRO C:91 , HIS C:213 , GLU C:266 , TRP C:270 , HIS C:275 , VAL C:280 , THR C:281 , CYS C:282 , CYS C:285 , HIS C:286 , ASN C:305 , PRO C:306 , PHE C:307 , HIS C:388 , GLY C:389 , HIS C:391 , MET C:392 , HIS C:393 , HOH C:693 , HOH C:835 , HOH C:1183 , HOH C:1356
BINDING SITE FOR RESIDUE HEC C 6
16
CC7
SOFTWARE
HEC B:7 , ILE B:274 , HIS B:318 , GLN B:320 , GLU B:396 , EU B:479 , EU B:480 , HEC C:6 , ILE C:274 , HIS C:275 , VAL C:280 , ASP C:284 , PHE C:307 , THR C:313 , CYS C:314 , CYS C:317 , HIS C:318 , ARG C:332 , MET C:392 , HOH C:961 , HOH C:969
BINDING SITE FOR RESIDUE HEC C 7
17
CC8
SOFTWARE
ASP A:457 , HOH A:826 , HOH A:1514 , GLU C:190 , HOH C:521 , HOH C:622 , HOH C:866
BINDING SITE FOR RESIDUE EU C 479
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (B:155-323,C:155-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
NRFA_ECOLI
155-323
2
-
B:155-323
C:155-323
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3tora_ (A:)
1b: SCOP_d3torb_ (B:)
1c: SCOP_d3torc_ (C:)
1d: SCOP_d3tord_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Escherichia coli [TaxId: 562]
(2)
1a
d3tora_
A:
1b
d3torb_
B:
1c
d3torc_
C:
1d
d3tord_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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