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Biol. Unit 1
Info
Asym.Unit (162 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENGINEERED CYTOCHROME CB562 THAT FORMS 1D, ZN-MEDIATED COORDINATION POLYMERS
Authors
:
J. B. Brodin, F. A. Tezcan
Date
:
05 Sep 11 (Deposition) - 04 Jul 12 (Release) - 04 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Four Helix Bundle, Electron Transfer, Periplasmic Space, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Brodin, X. I. Ambroggio, C. Tang, K. N. Parent, T. S. Baker, F. A. Tezcan
Metal-Directed, Chemically Tunable Assembly Of One-, Two- And Three-Dimensional Crystalline Protein Arrays.
Nat Chem V. 4 375 2012
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC8 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:4 , MET A:7 , GLU A:8 , LEU A:14 , MET A:33 , PRO A:45 , PRO A:46 , PHE A:61 , PHE A:65 , CYS A:98 , CYS A:101 , HIS A:102 , ARG A:106 , HOH A:350
BINDING SITE FOR RESIDUE HEM A 150
2
AC2
SOFTWARE
HIS A:73 , HIS A:77 , HIS B:63 , GLU C:81
BINDING SITE FOR RESIDUE ZN A 107
3
AC3
SOFTWARE
LYS A:19 , ASP A:21 , HOH A:121 , HOH A:363 , LYS B:19 , ASP B:21
BINDING SITE FOR RESIDUE CA A 108
4
AC5
SOFTWARE
GLU A:81 , HIS C:73 , HIS C:77 , HIS D:63
BINDING SITE FOR RESIDUE ZN C 107
5
AC8
SOFTWARE
GLU B:81 , HIS C:63 , HIS D:73 , HIS D:77
BINDING SITE FOR RESIDUE ZN D 107
6
AC9
SOFTWARE
GLU B:4 , MET B:7 , PRO B:45 , PRO B:46 , PHE B:61 , PHE B:65 , LEU B:68 , LEU B:94 , CYS B:98 , CYS B:101 , HIS B:102 , TYR B:105 , ARG B:106 , HOH B:191 , HOH B:305 , HOH B:312 , HOH C:292
BINDING SITE FOR RESIDUE HEM B 150
7
BC1
SOFTWARE
HIS A:63 , HIS B:73 , HIS B:77 , GLU D:81
BINDING SITE FOR RESIDUE ZN B 107
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3tola_ (A:)
1b: SCOP_d3tolb_ (B:)
1c: SCOP_d3tolc_ (C:)
1d: SCOP_d3told_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Cytochromes
(82)
Family
:
Cytochrome b562
(38)
Protein domain
:
automated matches
(32)
Escherichia coli [TaxId: 562]
(31)
1a
d3tola_
A:
1b
d3tolb_
B:
1c
d3tolc_
C:
1d
d3told_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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