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3TNL
Asym. Unit
Info
Asym.Unit (466 KB)
Biol.Unit 1 (233 KB)
Biol.Unit 2 (229 KB)
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(1)
Title
:
1.45 ANGSTROM CRYSTAL STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH SHIKIMATE AND NAD.
Authors
:
G. Minasov, S. H. Light, A. Halavaty, L. Shuvalova, L. Papazisi, W. F. An Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
01 Sep 11 (Deposition) - 28 Sep 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Nad(P)-Binding Rossmann-Fold Domain, Shikimate 5- Dehydrogenase, Nad, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, S. H. Light, A. Halavaty, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 45 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenas From Listeria Monocytogenes In Complex With Shikimate And Nad.
To Be Published
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMa)
3b: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHE... (SKMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
SKM
2
Ligand/Ion
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLICACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:74 , ASP A:113 , GLY A:137 , ALA A:138 , GLY A:139 , GLY A:140 , ALA A:141 , ASN A:161 , ARG A:162 , ASP A:164 , PHE A:166 , THR A:210 , GLY A:211 , VAL A:212 , MET A:214 , PHE A:217 , LEU A:222 , VAL A:238 , TYR A:240 , GLY A:261 , MET A:264 , MET A:265 , HOH A:317 , HOH A:471 , HOH A:472 , HOH A:497 , HOH A:645 , HOH A:860 , HOH A:861 , HOH A:915 , HOH A:952 , HOH A:1208 , HOH A:1511 , HOH A:1702 , HOH D:367
BINDING SITE FOR RESIDUE NAD A 292
02
AC2
SOFTWARE
LEU A:18 , ILE A:23 , SER A:26 , SER A:28 , ASN A:71 , SER A:73 , LYS A:77 , ASN A:98 , ASP A:113 , GLN A:268 , HOH A:341 , HOH A:426 , HOH A:1723
BINDING SITE FOR RESIDUE SKM A 293
03
AC3
SOFTWARE
LYS A:279 , GLU A:280 , HOH A:984
BINDING SITE FOR RESIDUE CL A 294
04
AC4
SOFTWARE
MET B:74 , GLY B:137 , ALA B:138 , GLY B:139 , GLY B:140 , ALA B:141 , ASN B:161 , ARG B:162 , ASP B:164 , PHE B:166 , THR B:210 , GLY B:211 , VAL B:212 , MET B:214 , PHE B:217 , LEU B:222 , VAL B:238 , TYR B:240 , GLY B:261 , MET B:264 , MET B:265 , GLN B:268 , HOH B:303 , HOH B:325 , HOH B:698 , HOH B:1166 , HOH B:1522 , HOH B:1565 , HOH B:1709 , HOH B:1786 , HOH B:1795 , HOH B:1865 , GLU C:274
BINDING SITE FOR RESIDUE NAD B 292
05
AC5
SOFTWARE
MET B:74 , PRO B:75 , LYS B:77
BINDING SITE FOR RESIDUE CL B 293
06
AC6
SOFTWARE
MET C:74 , ASP C:113 , GLY C:137 , ALA C:138 , GLY C:139 , GLY C:140 , ALA C:141 , ASN C:161 , ARG C:162 , ASP C:164 , PHE C:166 , THR C:210 , GLY C:211 , VAL C:212 , MET C:214 , PHE C:217 , VAL C:238 , TYR C:240 , GLY C:261 , MET C:264 , MET C:265 , SKM C:293 , HOH C:319 , HOH C:374 , HOH C:407 , HOH C:433 , HOH C:439 , HOH C:467 , HOH C:769 , HOH C:1007 , HOH C:1075 , HOH C:1311 , HOH C:1476 , HOH C:1587 , HOH C:1775
BINDING SITE FOR RESIDUE NAD C 292
07
AC7
SOFTWARE
LEU C:18 , ILE C:23 , SER C:26 , SER C:28 , ASN C:71 , SER C:73 , LYS C:77 , ASN C:98 , ASP C:113 , GLN C:268 , NAD C:292 , HOH C:398 , HOH C:709 , HOH C:796
BINDING SITE FOR RESIDUE SKM C 293
08
AC8
SOFTWARE
LYS C:279 , GLU C:280 , HOH C:885
BINDING SITE FOR RESIDUE CL C 294
09
AC9
SOFTWARE
GLU A:274 , GLY D:137 , ALA D:138 , GLY D:139 , GLY D:140 , ALA D:141 , ASN D:161 , ARG D:162 , ASP D:164 , PHE D:166 , THR D:210 , GLY D:211 , VAL D:212 , MET D:214 , PHE D:217 , LEU D:222 , VAL D:238 , TYR D:240 , GLY D:261 , MET D:265 , GLN D:268 , HOH D:299 , HOH D:303 , HOH D:324 , HOH D:599 , HOH D:893 , HOH D:907 , HOH D:929 , HOH D:1045 , HOH D:1141 , HOH D:1273 , HOH D:1486 , HOH D:1767 , HOH D:1817
BINDING SITE FOR RESIDUE NAD D 292
10
BC1
SOFTWARE
MET D:74 , PRO D:75 , LYS D:77 , HOH D:1388
BINDING SITE FOR RESIDUE CL D 293
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3tnla1 (A:4-112)
1b: SCOP_d3tnlb1 (B:3-112)
1c: SCOP_d3tnlc1 (C:3-112)
1d: SCOP_d3tnld1 (D:4-112)
2a: SCOP_d3tnla2 (A:113-291)
2b: SCOP_d3tnlb2 (B:113-291)
2c: SCOP_d3tnlc2 (C:113-291)
2d: SCOP_d3tnld2 (D:113-291)
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Protein Domains
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)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Listeria monocytogenes [TaxId: 169963]
(2)
1a
d3tnla1
A:4-112
1b
d3tnlb1
B:3-112
1c
d3tnlc1
C:3-112
1d
d3tnld1
D:4-112
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Listeria monocytogenes [TaxId: 169963]
(3)
2a
d3tnla2
A:113-291
2b
d3tnlb2
B:113-291
2c
d3tnlc2
C:113-291
2d
d3tnld2
D:113-291
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (466 KB)
Header - Asym.Unit
Biol.Unit 1 (233 KB)
Header - Biol.Unit 1
Biol.Unit 2 (229 KB)
Header - Biol.Unit 2
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