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Getting 'Biological Unit' information from database.
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3TN8
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
CDK9/CYCLIN T IN COMPLEX WITH CAN508
Authors
:
S. Baumli, A. J. Hole, J. E. Endicott
Date
:
01 Sep 11 (Deposition) - 15 Feb 12 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cyclin Dependent Kinase, Kinase, Cyclin, Phosphotransfer, Cdk-Cyclin Complex, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Baumli, A. J. Hole, M. E. Noble, J. A. Endicott
The Cdk9 C-Helix Exhibits Conformational Plasticity That Ma Explain The Selectivity Of Can508.
Acs Chem. Biol. V. 7 811 2012
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-Y... (F18a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
4a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F18
1
Ligand/Ion
4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-YL)DIAZENYL]PHENOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
PO4
3
Ligand/Ion
PHOSPHATE ION
4
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR B:37 , GLY B:80
BINDING SITE FOR RESIDUE GOL B 260
2
AC2
SOFTWARE
LYS B:99 , LYS B:100 , HIS B:103
BINDING SITE FOR RESIDUE PO4 B 261
3
AC3
SOFTWARE
ASN B:250 , LYS B:253 , ARG B:254
BINDING SITE FOR RESIDUE PO4 B 262
4
AC4
SOFTWARE
LYS A:49 , SER A:98 , TYR A:100
BINDING SITE FOR RESIDUE PO4 A 331
5
AC5
SOFTWARE
ILE A:25 , ALA A:46 , LYS A:48 , GLU A:66 , PHE A:103 , ASP A:104 , CYS A:106 , LEU A:156 , ASP A:167 , PHE A:168
BINDING SITE FOR RESIDUE F18 A 332
6
AC6
SOFTWARE
ILE A:61 , ARG A:65 , LYS A:68 , LYS B:93 , VAL B:94
BINDING SITE FOR RESIDUE GOL A 333
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041982 (F59L, chain A, )
2: VAR_013456 (G231A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041982
F
59
L
CDK9_HUMAN
Polymorphism
55640715
A
F
59
L
2
UniProt
VAR_013456
G
231
A
CDK9_HUMAN
Polymorphism
---
A
G
231
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:25-48)
2: PROTEIN_KINASE_ST (A:145-157)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK9_HUMAN
25-48
1
A:25-48
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK9_HUMAN
145-157
1
A:145-157
[
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Exons
(15, 15)
Info
All Exons
Exon 1.1 (B:8-54)
Exon 1.2 (B:54-81)
Exon 1.3 (B:82-124)
Exon 1.4 (B:125-145)
Exon 1.5 (B:145-166)
Exon 1.6 (B:166-181)
Exon 1.8 (B:181-236)
Exon 1.9 (B:236-259)
Exon 2.1c (A:8-31)
Exon 2.2a (A:31-58)
Exon 2.3c (A:59-87)
Exon 2.4 (A:97-144)
Exon 2.5b (A:145-202 (gaps))
Exon 2.6c (A:202-251)
Exon 2.7c (A:252-325)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary -/2.1c
11: Boundary 2.1c/2.2a
12: Boundary 2.2a/2.3c
13: Boundary 2.3c/2.4
14: Boundary 2.4/2.5b
15: Boundary 2.5b/2.6c
16: Boundary 2.6c/2.7c
17: Boundary 2.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261900
1
ENSE00001164718
chr12:
49110781-49110298
484
CCNT1_HUMAN
1-54
54
1
B:8-54
47
1.2
ENST00000261900
2
ENSE00000914192
chr12:
49108307-49108226
82
CCNT1_HUMAN
54-81
28
1
B:54-81
28
1.3
ENST00000261900
3
ENSE00000938798
chr12:
49099679-49099551
129
CCNT1_HUMAN
82-124
43
1
B:82-124
43
1.4
ENST00000261900
4
ENSE00000938799
chr12:
49094856-49094796
61
CCNT1_HUMAN
125-145
21
1
B:125-145
21
1.5
ENST00000261900
5
ENSE00000938800
chr12:
49093623-49093561
63
CCNT1_HUMAN
145-166
22
1
B:145-166
22
1.6
ENST00000261900
6
ENSE00000938801
chr12:
49091966-49091921
46
CCNT1_HUMAN
166-181
16
1
B:166-181
16
1.8
ENST00000261900
8
ENSE00000938802
chr12:
49089945-49089782
164
CCNT1_HUMAN
181-236
56
1
B:181-236
56
1.9
ENST00000261900
9
ENSE00000938803
chr12:
49089612-49089542
71
CCNT1_HUMAN
236-259
24
1
B:236-259
24
1.10
ENST00000261900
10
ENSE00001164708
chr12:
49088219-49086752
1468
CCNT1_HUMAN
260-726
467
0
-
-
2.1c
ENST00000373264
1c
ENSE00001251705
chr9:
130548328-130548519
192
CDK9_HUMAN
1-31
31
1
A:8-31
24
2.2a
ENST00000373264
2a
ENSE00000984615
chr9:
130548980-130549061
82
CDK9_HUMAN
31-58
28
1
A:31-58
28
2.3c
ENST00000373264
3c
ENSE00000984616
chr9:
130549797-130549887
91
CDK9_HUMAN
59-89
31
1
A:59-87
29
2.4
ENST00000373264
4
ENSE00000984617
chr9:
130550226-130550392
167
CDK9_HUMAN
89-144
56
1
A:97-144
48
2.5b
ENST00000373264
5b
ENSE00000984618
chr9:
130550493-130550664
172
CDK9_HUMAN
145-202
58
1
A:145-202 (gaps)
58
2.6c
ENST00000373264
6c
ENSE00000984619
chr9:
130550823-130550971
149
CDK9_HUMAN
202-251
50
1
A:202-251
50
2.7c
ENST00000373264
7c
ENSE00001814236
chr9:
130551457-130553066
1610
CDK9_HUMAN
252-372
121
1
A:252-325
74
[
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3tn8b1 (B:8-150)
1b: SCOP_d3tn8b2 (B:151-259)
2a: SCOP_d3tn8a_ (A:)
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Classes
(
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(
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Folds
(
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(
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(
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Cyclin T1
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3tn8b1
B:8-150
1b
d3tn8b2
B:151-259
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cell division protein kinase 9, CDK9
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d3tn8a_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Nucleic
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Protein & NOT PROSITE
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Chain B
Asymmetric Unit 1
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