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3TKS
Asym. Unit
Info
Asym.Unit (177 KB)
Biol.Unit 1 (338 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN PEROXIREDOXIN 4 IN THREE DIFFERENT REDOX STATES
Authors
:
X. Wang, L. Wang, X. Wang, F. Sun, C. -C. Wang
Date
:
28 Aug 11 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Trx Fold, Peroxiredoxin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Wang, L. Wang, X. Wang, F. Sun, C. -C. Wang
Structural Insights Into The Peroxidase Activity And Inactivation Of Human Peroxiredoxin 4
Biochem. J. 2011
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
3a: PEROXIDE ION (PERa)
3b: PEROXIDE ION (PERb)
3c: PEROXIDE ION (PERc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
2
Mod. Amino Acid
3-SULFINOALANINE
2
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
PER
3
Ligand/Ion
PEROXIDE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:163 , LEU A:182 , HOH A:281 , HOH A:282 , HOH A:304
BINDING SITE FOR RESIDUE PER A 235
2
AC2
SOFTWARE
PHE C:85 , VAL C:86 , CSD C:87 , ARG C:163 , HOH C:374
BINDING SITE FOR RESIDUE PER C 235
3
AC3
SOFTWARE
PHE D:85 , VAL D:86 , CSD D:87 , ARG D:163 , HOH D:241
BINDING SITE FOR RESIDUE PER D 235
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:42-200,B:42-200,C:42-200,D:42-20...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX4_HUMAN
79-237
5
A:42-200
B:42-200
C:42-200
D:42-200
E:42-200
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Exons
(7, 35)
Info
All Exons
Exon 1.2a (A:38-44 | B:38-44 | C:38-44 | D:38...)
Exon 1.4 (A:44-83 | B:44-83 | C:44-83 | D:44...)
Exon 1.5a (A:83-122 | B:83-122 | C:83-122 | D...)
Exon 1.6b (A:122-163 | B:122-163 | C:122-163 ...)
Exon 1.7 (A:163-207 | B:163-207 | C:163-207 ...)
Exon 1.8 (A:207-218 | B:207-218 | C:207-218 ...)
Exon 1.10c (A:219-234 | B:219-234 | C:219-234 ...)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6b
5: Boundary 1.6b/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.10c
8: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000379341
2a
ENSE00001858070
X:23685563-23685928
366
PRDX4_HUMAN
1-81
81
5
A:38-44
B:38-44
C:38-44
D:38-44
E:38-44
7
7
7
7
7
1.4
ENST00000379341
4
ENSE00000836232
X:23689646-23689763
118
PRDX4_HUMAN
81-120
40
5
A:44-83
B:44-83
C:44-83
D:44-83
E:44-83
40
40
40
40
40
1.5a
ENST00000379341
5a
ENSE00000836233
X:23693107-23693223
117
PRDX4_HUMAN
120-159
40
5
A:83-122
B:83-122
C:83-122
D:83-122
E:83-122
40
40
40
40
40
1.6b
ENST00000379341
6b
ENSE00002147918
X:23697282-23697404
123
PRDX4_HUMAN
159-200
42
5
A:122-163
B:122-163
C:122-163
D:122-163
E:122-163
42
42
42
42
42
1.7
ENST00000379341
7
ENSE00000836235
X:23700513-23700643
131
PRDX4_HUMAN
200-244
45
5
A:163-207
B:163-207
C:163-207
D:163-207
E:163-207
45
45
45
45
45
1.8
ENST00000379341
8
ENSE00000836236
X:23701788-23701822
35
PRDX4_HUMAN
244-255
12
5
A:207-218
B:207-218
C:207-218
D:207-218
E:207-218
12
12
12
12
12
1.10c
ENST00000379341
10c
ENSE00001828273
X:23704402-23704516
115
PRDX4_HUMAN
256-271
16
5
A:219-234
B:219-234
C:219-234
D:219-234
E:219-234
16
16
16
16
16
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3tksa_ (A:)
1b: SCOP_d3tksb_ (B:)
1c: SCOP_d3tksc_ (C:)
1d: SCOP_d3tksd_ (D:)
1e: SCOP_d3tkse_ (E:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3tksa_
A:
1b
d3tksb_
B:
1c
d3tksc_
C:
1d
d3tksd_
D:
1e
d3tkse_
E:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (177 KB)
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