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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3TK9
Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GRANZYME H
Authors
:
L. Wang, K. Zhang, L. Wu, L. Tong, F. Sun, Z. Fan
Date
:
25 Aug 11 (Deposition) - 28 Dec 11 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Protease, Hydrolase, Cytolysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Wang, K. Zhang, L. Wu, S. Liu, H. Zhang, Q. Zhou, L. Tong, F. Sun, Z. Fan
Structural Insights Into The Substrate Specificity Of Human Granzyme H: The Functional Roles Of A Novel Rkr Motif
J. Immunol. V. 188 765 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:41 , ARG A:43 , LYS A:75
BINDING SITE FOR RESIDUE SO4 A 300
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014556 (R79Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014556
R
84
Q
GRAH_HUMAN
Polymorphism
20545
A
R
79
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-239)
2: TRYPSIN_HIS (A:55-60)
3: TRYPSIN_SER (A:191-202)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
GRAH_HUMAN
21-244
1
A:16-239
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
GRAH_HUMAN
60-65
1
A:55-60
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
GRAH_HUMAN
196-207
1
A:191-202
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:16-63)
Exon 1.3 (A:63-108)
Exon 1.4 (A:109-194)
Exon 1.5b (A:195-241)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000216338
1
ENSE00000889483
chr14:
25078864-25078765
100
GRAH_HUMAN
1-19
19
0
-
-
1.2a
ENST00000216338
2a
ENSE00000654537
chr14:
25077618-25077471
148
GRAH_HUMAN
19-68
50
1
A:16-63
48
1.3
ENST00000216338
3
ENSE00001596918
chr14:
25076953-25076818
136
GRAH_HUMAN
68-113
46
1
A:63-108
46
1.4
ENST00000216338
4
ENSE00000654535
chr14:
25076612-25076355
258
GRAH_HUMAN
114-199
86
1
A:109-194
86
1.5b
ENST00000216338
5b
ENSE00001918960
chr14:
25075952-25075688
265
GRAH_HUMAN
200-246
47
1
A:195-241
47
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3tk9a_ (A:)
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Classes
(
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(
)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
automated matches
(162)
Human (Homo sapiens) [TaxId: 9606]
(132)
1a
d3tk9a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (42 KB)
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