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3TJ6
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (280 KB)
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(1)
Title
:
HUMAN VINCULIN HEAD DOMAIN (VH1, RESIDUES 1-258) IN COMPLEX WITH THE VINCULIN BINDING SITE OF THE SURFACE CELL ANTIGEN 4 (SCA4-VBS-C; RESIDUES 812-835) FROM RICKETTSIA RICKETTSII
Authors
:
H. Park, J. H. Lee, E. Gouin, P. Cossart, T. Izard
Date
:
23 Aug 11 (Deposition) - 07 Sep 11 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Keywords
:
Cytoskeleton, Epidemic Typhus, Sca4, Spotted Fever, Alpha-Helix Bundle Domain, Protein-Protein Interactions, Cell Adhesion, Cytosol, Focal Adhesion, Protein Binding-Toxin Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Park, J. H. Lee, E. Gouin, P. Cossart, T. Izard
The Rickettsia Surface Cell Antigen 4 Applies Mimicry To Bind To And Activate Vinculin.
J. Biol. Chem. V. 286 35096 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_037667 (V234L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_037667
V
234
L
VINC_HUMAN
Polymorphism
17853882
A
V
234
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VINCULIN_1 (A:162-182)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VINCULIN_1
PS00663
Vinculin family talin-binding region signature.
VINC_HUMAN
162-182
1
A:162-182
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-56 (gaps))
Exon 1.2a (A:57-80)
Exon 1.4 (A:80-130)
Exon 1.5 (A:131-167)
Exon 1.6 (A:167-208)
Exon 1.7a (A:208-257)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000211998
1a
ENSE00002146319
chr10:
75757872-75758133
262
VINC_HUMAN
1-56
56
1
A:1-56 (gaps)
56
1.2a
ENST00000211998
2a
ENSE00001607712
chr10:
75802841-75802911
71
VINC_HUMAN
57-80
24
1
A:57-80
24
1.4
ENST00000211998
4
ENSE00001024254
chr10:
75830428-75830578
151
VINC_HUMAN
80-130
51
1
A:80-130
51
1.5
ENST00000211998
5
ENSE00001024245
chr10:
75830733-75830841
109
VINC_HUMAN
131-167
37
1
A:131-167
37
1.6
ENST00000211998
6
ENSE00001024249
chr10:
75832488-75832610
123
VINC_HUMAN
167-208
42
1
A:167-208
42
1.7a
ENST00000211998
7a
ENSE00001024263
chr10:
75834501-75834661
161
VINC_HUMAN
208-261
54
1
A:208-257
50
1.8
ENST00000211998
8
ENSE00001024248
chr10:
75842212-75842302
91
VINC_HUMAN
262-292
31
0
-
-
1.9a
ENST00000211998
9a
ENSE00000986356
chr10:
75843124-75843271
148
VINC_HUMAN
292-341
50
0
-
-
1.10
ENST00000211998
10
ENSE00000986357
chr10:
75848954-75849107
154
VINC_HUMAN
341-392
52
0
-
-
1.11
ENST00000211998
11
ENSE00000986358
chr10:
75849781-75849956
176
VINC_HUMAN
393-451
59
0
-
-
1.12
ENST00000211998
12
ENSE00001024262
chr10:
75854029-75854219
191
VINC_HUMAN
451-515
65
0
-
-
1.13
ENST00000211998
13
ENSE00000986360
chr10:
75855414-75855613
200
VINC_HUMAN
515-581
67
0
-
-
1.14
ENST00000211998
14
ENSE00000986361
chr10:
75856962-75857090
129
VINC_HUMAN
582-624
43
0
-
-
1.15a
ENST00000211998
15a
ENSE00000986362
chr10:
75860706-75860855
150
VINC_HUMAN
625-674
50
0
-
-
1.16
ENST00000211998
16
ENSE00000986363
chr10:
75863578-75863686
109
VINC_HUMAN
675-711
37
0
-
-
1.17c
ENST00000211998
17c
ENSE00000986364
chr10:
75864809-75865111
303
VINC_HUMAN
711-812
102
0
-
-
1.18
ENST00000211998
18
ENSE00000986365
chr10:
75866988-75867112
125
VINC_HUMAN
812-853
42
0
-
-
1.19b
ENST00000211998
19b
ENSE00000834577
chr10:
75868729-75868914
186
VINC_HUMAN
854-915
62
0
-
-
1.20
ENST00000211998
20
ENSE00000709651
chr10:
75871667-75871870
204
VINC_HUMAN
916-983
68
0
-
-
1.21
ENST00000211998
21
ENSE00000709670
chr10:
75873942-75874145
204
VINC_HUMAN
984-1051
68
0
-
-
1.22
ENST00000211998
22
ENSE00000986366
chr10:
75874553-75874657
105
VINC_HUMAN
1052-1086
35
0
-
-
1.23a
ENST00000211998
23a
ENSE00001373600
chr10:
75877781-75879910
2130
VINC_HUMAN
1087-1134
48
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3tj6a1 (A:1-128)
1b: SCOP_d3tj6a2 (A:129-257)
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
alpha-catenin/vinculin-like
(25)
Family
:
alpha-catenin/vinculin
(24)
Protein domain
:
Vinculin
(12)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3tj6a1
A:1-128
1b
d3tj6a2
A:129-257
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Pfam Domains
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