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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3TIY
Asym. Unit
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Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
CDK2 IN COMPLEX WITH NSC 35676
Authors
:
R. Alam, E. Schonbrunn
Date
:
22 Aug 11 (Deposition) - 22 Aug 12 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Kinase, Allosteric Ligand, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. P. Martin, R. Alam, S. Betzi, D. J. Ingles, J. Y. Zhu, E. Schonbrunn
A Novel Approach To The Discovery Of Small-Molecule Ligands Of Cdk2.
Chembiochem V. 13 2128 2012
[
close entry info
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
2a: 2,3,4,6-TETRAHYDROXY-5H-BENZO[7]AN... (TIYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
2
TIY
1
Ligand/Ion
2,3,4,6-TETRAHYDROXY-5H-BENZO[7]ANNULEN-5-ONE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:28 , VAL A:29
BINDING SITE FOR RESIDUE EDO A 299
02
AC2
SOFTWARE
HIS A:84 , LEU A:298 , HOH A:333 , HOH A:424
BINDING SITE FOR RESIDUE EDO A 300
03
AC3
SOFTWARE
ARG A:126 , ALA A:149 , VAL A:154 , TYR A:180
BINDING SITE FOR RESIDUE EDO A 301
04
AC4
SOFTWARE
PRO A:100 , PRO A:102 , PRO A:292 , VAL A:293 , HOH A:361 , HOH A:432
BINDING SITE FOR RESIDUE EDO A 302
05
AC5
SOFTWARE
ARG A:126 , ARG A:150 , LYS A:178 , TYR A:179 , TYR A:180
BINDING SITE FOR RESIDUE EDO A 303
06
AC6
SOFTWARE
THR A:137 , GLU A:138 , HOH A:375
BINDING SITE FOR RESIDUE EDO A 304
07
AC7
SOFTWARE
GLU A:2 , LYS A:24
BINDING SITE FOR RESIDUE EDO A 305
08
AC8
SOFTWARE
LYS A:105 , ASP A:258 , PRO A:284 , PHE A:285 , GLN A:287 , ASP A:288 , HOH A:340
BINDING SITE FOR RESIDUE EDO A 306
09
AC9
SOFTWARE
ARG A:199 , ARG A:200 , THR A:231 , TYR A:236 , PRO A:238
BINDING SITE FOR RESIDUE EDO A 307
10
BC1
SOFTWARE
HIS A:295 , LEU A:296 , ARG A:297 , HOH A:345
BINDING SITE FOR RESIDUE EDO A 308
11
BC2
SOFTWARE
ASN A:59 , HIS A:60 , PRO A:61 , HOH A:358
BINDING SITE FOR RESIDUE EDO A 309
12
BC3
SOFTWARE
ILE A:63 , VAL A:64 , PHE A:80 , ASP A:145 , HOH A:407 , HOH A:411
BINDING SITE FOR RESIDUE EDO A 310
13
BC4
SOFTWARE
ILE A:10 , VAL A:18 , ALA A:31 , LYS A:33 , VAL A:64 , PHE A:80 , GLU A:81 , PHE A:82 , LEU A:83 , LEU A:134 , ASP A:145 , HOH A:411
BINDING SITE FOR RESIDUE TIY A 311
[
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016157 (Y15S, chain A, )
2: VAR_053927 (V18L, chain A, )
3: VAR_041972 (P45L, chain A, )
4: VAR_019988 (T290S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
A
Y
15
S
2
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
A
V
18
L
3
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
A
P
45
L
4
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
A
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:10-33)
2: PROTEIN_KINASE_ST (A:123-135)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
1
A:10-33
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
1
A:123-135
[
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]
Exons
(7, 7)
Info
All Exons
Exon 1.1 (A:2-36)
Exon 1.2 (A:41-65)
Exon 1.3 (A:65-105)
Exon 1.4 (A:106-162)
Exon 1.5 (A:163-196)
Exon 1.6 (A:197-264)
Exon 1.7 (A:265-298)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000266970
1
ENSE00001301614
chr12:
56360556-56360908
353
CDK2_HUMAN
1-39
39
1
A:2-36
35
1.2
ENST00000266970
2
ENSE00000838625
chr12:
56361641-56361718
78
CDK2_HUMAN
39-65
27
1
A:41-65
25
1.3
ENST00000266970
3
ENSE00000838626
chr12:
56361833-56361953
121
CDK2_HUMAN
65-105
41
1
A:65-105
41
1.4
ENST00000266970
4
ENSE00000838629
chr12:
56362562-56362732
171
CDK2_HUMAN
106-162
57
1
A:106-162
57
1.5
ENST00000266970
5
ENSE00001704611
chr12:
56363259-56363360
102
CDK2_HUMAN
163-196
34
1
A:163-196
34
1.6
ENST00000266970
6
ENSE00000938649
chr12:
56364828-56365031
204
CDK2_HUMAN
197-264
68
1
A:197-264
68
1.7
ENST00000266970
7
ENSE00001215687
chr12:
56365305-56366565
1261
CDK2_HUMAN
265-298
34
1
A:265-298
34
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3tiya_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
1a
d3tiya_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
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Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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