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3TIA
Asym. Unit
Info
Asym.Unit (584 KB)
Biol.Unit 1 (573 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 1957 PANDEMIC H2N2 NEURAMINIDASE COMPLEXED WITH LANINAMIVIR
Authors
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng, J. Wang, H. Liu, H. Jiang, G. F. Gao
Date
:
20 Aug 11 (Deposition) - 16 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
6-Bladed Beta-Propeller, Calcium Binding, Glycosylation, Antiviral, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng J. He, J. Wang, H. Liu, H. Jiang, G. F. Gao
Structural And Functional Analysis Of Laninamivir And Its Octanoate Prodrug Reveals Group Specific Mechanisms For Influenza Na Inhibition
Plos Pathog. V. 7 02249 2011
[
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Hetero Components
(5, 31)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVa)
3b: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVb)
3c: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVc)
3d: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVd)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
4
Ligand/Ion
CALCIUM ION
3
LNV
4
Ligand/Ion
5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5-TRIDEOXY-7-O-METHYL-D-GLYCERO-D-GALACTO-NON-2-ENONICACID
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLN A:347 , HOH A:470
BINDING SITE FOR RESIDUE CA A 501
02
AC2
SOFTWARE
ASN A:146 , TRP A:437 , ILE A:469 , NAG A:602 , HOH A:1252 , HOH A:1542 , HOH A:1896
BINDING SITE FOR RESIDUE NAG A 601
03
AC3
SOFTWARE
TRP A:437 , NAG A:601 , HOH A:1607
BINDING SITE FOR RESIDUE NAG A 602
04
AC4
SOFTWARE
ASN A:200 , NAG A:604 , HOH A:636 , HOH A:1156 , HOH A:1416 , HOH A:1431 , TYR D:453 , GLY D:454 , THR D:455 , HOH D:509
BINDING SITE FOR RESIDUE NAG A 603
05
AC5
SOFTWARE
HOH A:499 , HOH A:552 , NAG A:603 , BMA A:605 , HOH A:688 , HOH A:1431 , ASN D:393 , ARG D:394
BINDING SITE FOR RESIDUE NAG A 604
06
AC6
SOFTWARE
HOH A:499 , NAG A:604 , MAN A:606 , HOH A:1375 , GLN D:391 , VAL D:392 , ARG D:394
BINDING SITE FOR RESIDUE BMA A 605
07
AC7
SOFTWARE
HOH A:576 , HOH A:596 , BMA A:605 , HOH A:688 , HOH A:773 , HOH A:977 , HOH A:1576 , GLN D:391 , ARG D:394 , HOH D:544
BINDING SITE FOR RESIDUE MAN A 606
08
AC8
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:178 , ARG A:224 , GLU A:227 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:572 , HOH A:629 , HOH A:631 , HOH A:1536 , HOH A:1614
BINDING SITE FOR RESIDUE LNV A 801
09
AC9
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLN B:347 , HOH B:475
BINDING SITE FOR RESIDUE CA B 501
10
BC1
SOFTWARE
ASN B:146 , TRP B:437 , HOH B:542 , HOH B:1335 , HOH B:1360
BINDING SITE FOR RESIDUE NAG B 601
11
BC2
SOFTWARE
TYR A:453 , GLY A:454 , THR A:455 , HOH A:518 , ASN B:200 , HOH B:491 , NAG B:604 , HOH B:1207 , HOH B:1410 , HOH B:1583
BINDING SITE FOR RESIDUE NAG B 603
12
BC3
SOFTWARE
ASN A:393 , ARG A:394 , HOH A:513 , HOH B:591 , NAG B:603 , BMA B:605 , HOH B:852 , HOH B:1284 , HOH B:1410 , HOH B:1490
BINDING SITE FOR RESIDUE NAG B 604
13
BC4
SOFTWARE
GLN A:391 , VAL A:392 , ARG A:394 , HOH B:500 , HOH B:591 , NAG B:604 , MAN B:606 , HOH B:624
BINDING SITE FOR RESIDUE BMA B 605
14
BC5
SOFTWARE
GLN A:391 , ARG A:394 , HOH A:599 , HOH B:492 , HOH B:557 , BMA B:605 , HOH B:852 , HOH B:1171 , HOH B:1304 , HOH B:1624
BINDING SITE FOR RESIDUE MAN B 606
15
BC6
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:156 , TRP B:178 , ILE B:222 , ARG B:224 , GLU B:227 , ALA B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ARG B:371 , TYR B:406 , HOH B:471 , HOH B:555 , HOH B:633
BINDING SITE FOR RESIDUE LNV B 801
16
BC7
SOFTWARE
ASP C:293 , GLY C:297 , ASP C:324 , GLY C:345 , GLN C:347 , HOH C:470
BINDING SITE FOR RESIDUE CA C 501
17
BC8
SOFTWARE
ASN C:146 , TRP C:437 , ILE C:469 , NAG C:602 , HOH C:1141 , HOH C:1381 , HOH C:1662
BINDING SITE FOR RESIDUE NAG C 601
18
BC9
SOFTWARE
TRP C:437 , NAG C:601 , HOH C:1823 , HOH C:1911
BINDING SITE FOR RESIDUE NAG C 602
19
CC1
SOFTWARE
TYR B:453 , GLY B:454 , THR B:455 , HOH B:534 , ASN C:200 , HOH C:552 , NAG C:604 , HOH C:1412 , HOH C:1444 , HOH C:1657
BINDING SITE FOR RESIDUE NAG C 603
20
CC2
SOFTWARE
ASN B:393 , ARG B:394 , HOH C:524 , NAG C:603 , BMA C:605 , HOH C:613 , HOH C:959 , HOH C:1412 , HOH C:1667
BINDING SITE FOR RESIDUE NAG C 604
21
CC3
SOFTWARE
GLN B:391 , VAL B:392 , ARG B:394 , NAG C:604 , MAN C:606 , HOH C:613 , HOH C:685 , HOH C:1606
BINDING SITE FOR RESIDUE BMA C 605
22
CC4
SOFTWARE
GLN B:391 , ARG B:394 , HOH C:556 , HOH C:592 , BMA C:605 , HOH C:778 , HOH C:959 , HOH C:1286 , HOH C:1334
BINDING SITE FOR RESIDUE MAN C 606
23
CC5
SOFTWARE
ARG C:118 , GLU C:119 , ASP C:151 , ARG C:152 , ARG C:156 , TRP C:178 , ARG C:224 , GLU C:227 , ALA C:246 , GLU C:276 , GLU C:277 , ARG C:292 , ASN C:294 , ARG C:371 , TYR C:406 , HOH C:565 , HOH C:597 , HOH C:599
BINDING SITE FOR RESIDUE LNV C 801
24
CC6
SOFTWARE
ASP D:293 , GLY D:297 , ASP D:324 , GLY D:345 , GLN D:347 , HOH D:477
BINDING SITE FOR RESIDUE CA D 501
25
CC7
SOFTWARE
ASN D:146 , TRP D:437 , ILE D:469 , NAG D:602 , HOH D:686 , HOH D:1889
BINDING SITE FOR RESIDUE NAG D 601
26
CC8
SOFTWARE
NAG D:601 , HOH D:1399
BINDING SITE FOR RESIDUE NAG D 602
27
CC9
SOFTWARE
TYR C:453 , GLY C:454 , THR C:455 , HOH C:493 , ASN D:200 , HOH D:475 , NAG D:604 , HOH D:1392 , HOH D:1543 , HOH D:1655 , HOH D:1755
BINDING SITE FOR RESIDUE NAG D 603
28
DC1
SOFTWARE
ASN C:393 , ARG C:394 , HOH C:510 , HOH D:568 , NAG D:603 , BMA D:605 , HOH D:1240 , HOH D:1289 , HOH D:1543
BINDING SITE FOR RESIDUE NAG D 604
29
DC2
SOFTWARE
GLN C:391 , VAL C:392 , ARG C:394 , HOH D:568 , NAG D:604 , MAN D:606 , HOH D:623 , HOH D:714
BINDING SITE FOR RESIDUE BMA D 605
30
DC3
SOFTWARE
GLN C:391 , ARG C:394 , HOH C:575 , HOH C:600 , HOH D:581 , BMA D:605 , HOH D:713 , HOH D:1071 , HOH D:1264 , HOH D:1342 , HOH D:1737
BINDING SITE FOR RESIDUE MAN D 606
31
DC4
SOFTWARE
ARG D:118 , GLU D:119 , ASP D:151 , ARG D:152 , ARG D:156 , TRP D:178 , ILE D:222 , ARG D:224 , GLU D:227 , ALA D:246 , GLU D:276 , GLU D:277 , ARG D:292 , ASN D:294 , ARG D:371 , TYR D:406 , HOH D:541 , HOH D:547 , HOH D:584 , HOH D:1121
BINDING SITE FOR RESIDUE LNV D 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3tiaa_ (A:)
1b: SCOP_d3tiab_ (B:)
1c: SCOP_d3tiac_ (C:)
1d: SCOP_d3tiad_ (D:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Influenza a virus [TaxId: 382827]
(9)
1a
d3tiaa_
A:
1b
d3tiab_
B:
1c
d3tiac_
C:
1d
d3tiad_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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]
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Chain D
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