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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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3TI6
Biol. Unit 1
Info
Asym.Unit (291 KB)
Biol.Unit 1 (563 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2009 PANDEMIC H1N1 NEURAMINIDASE COMPLEXED WITH OSELTAMIVIR
Authors
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng, J. Wang, H. Liu, H. Jiang, G. F. Gao
Date
:
20 Aug 11 (Deposition) - 23 Nov 11 (Release) - 23 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Calcium Binding, Glycosylation, Antiviral, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng J. He, J. Wang, H. Liu, H. Jiang, G. F. Gao
Structural And Functional Analysis Of Laninamivir And Its Octanoate Prodrug Reveals Group Specific Mechanisms For Influenza Na Inhibition
Plos Pathog. V. 7 02249 2011
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Hetero Components
(6, 40)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
4a: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39a)
4b: (3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO... (G39b)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
14
Ligand/Ion
ACETATE ION
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
G39
4
Ligand/Ion
(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
5
GOL
6
Ligand/Ion
GLYCEROL
6
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , HOH A:499 , NAG A:502 , HOH A:680 , HOH A:719 , HOH A:749 , HOH A:775
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501 , BMA A:503 , HOH A:711 , ASN B:329 , HOH B:736
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
NAG A:502 , MAN A:504 , HOH A:692 , HOH A:711 , HOH B:712
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
BMA A:503 , ARG B:327 , ASP B:330 , ARG B:364 , LYS B:366 , GLU B:375 , HOH B:659
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
ALA A:86 , ASN A:88 , HOH A:612 , HOH A:616 , HOH A:744 , HOH A:771
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347 , HOH A:475
BINDING SITE FOR RESIDUE CA A 601
07
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , ASN A:389 , HOH A:571 , HOH A:618
BINDING SITE FOR RESIDUE CA A 602
08
AC8
SOFTWARE
HOH A:538 , HOH A:591 , HOH A:691 , HOH A:712
BINDING SITE FOR RESIDUE CA A 603
09
AC9
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , TRP A:178 , ARG A:224 , GLU A:276 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:488 , HOH A:491 , HOH A:510 , HOH A:563 , HOH A:840
BINDING SITE FOR RESIDUE G39 A 801
10
BC1
SOFTWARE
TRP A:403 , ILE A:427 , GLY A:429 , ARG A:430 , PRO A:431 , LYS A:432 , GLU A:433 , HOH A:718
BINDING SITE FOR RESIDUE GOL A 1
11
BC2
SOFTWARE
CYS A:129 , HOH A:779 , ASN B:208 , ILE B:210
BINDING SITE FOR RESIDUE ACT A 471
12
BC3
SOFTWARE
SER A:95 , ILE A:392 , LYS A:394 , THR A:453 , VAL A:454
BINDING SITE FOR RESIDUE ACT A 472
13
BC4
SOFTWARE
VAL A:94 , TYR A:356 , TRP A:361 , TRP A:378 , HOH A:639
BINDING SITE FOR RESIDUE GOL A 473
14
BC5
SOFTWARE
ASN A:272 , TYR A:273 , PRO A:340 , HOH A:781
BINDING SITE FOR RESIDUE ACT A 474
15
BC6
SOFTWARE
ASN B:146 , HOH B:635 , HOH B:683 , HOH B:719 , HOH B:721
BINDING SITE FOR RESIDUE NAG B 501
16
BC7
SOFTWARE
ASN B:88 , HOH B:487 , HOH B:609 , HOH B:686 , HOH B:747
BINDING SITE FOR RESIDUE NAG B 502
17
BC8
SOFTWARE
LYS B:84 , ASN B:234 , HOH B:583 , HOH B:603 , HOH B:623 , HOH B:746 , HOH B:791
BINDING SITE FOR RESIDUE NAG B 503
18
BC9
SOFTWARE
HOH B:5 , ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 601
19
CC1
SOFTWARE
ASP B:379 , ASN B:381 , ASP B:387 , ASN B:389 , HOH B:561 , HOH B:627
BINDING SITE FOR RESIDUE CA B 602
20
CC2
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:224 , GLU B:276 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , HOH B:476 , HOH B:508 , HOH B:554 , HOH B:579 , HOH B:704
BINDING SITE FOR RESIDUE G39 B 801
21
CC3
SOFTWARE
TRP B:403 , ILE B:427 , ARG B:428 , GLY B:429 , ARG B:430 , PRO B:431 , LYS B:432 , GLU B:433 , HOH B:709
BINDING SITE FOR RESIDUE GOL B 1
22
CC4
SOFTWARE
SER B:95 , LYS B:394 , GLN B:395 , THR B:453 , VAL B:454 , ACT B:472
BINDING SITE FOR RESIDUE ACT B 471
23
CC5
SOFTWARE
LYS B:394 , GLN B:395 , ASP B:396 , GLY B:455 , ACT B:471 , HOH B:649 , HOH B:816
BINDING SITE FOR RESIDUE ACT B 472
24
CC6
SOFTWARE
ASN A:208 , GLU B:128 , CYS B:129
BINDING SITE FOR RESIDUE ACT B 473
25
CC7
SOFTWARE
SER B:369 , SER B:370 , LYS B:432 , GLU B:433 , ASN B:435 , PRO B:465 , HOH B:691
BINDING SITE FOR RESIDUE ACT B 474
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ti6a_ (A:)
1b: SCOP_d3ti6b_ (B:)
View:
Select:
Label:
Classes
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Folds
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Superfamilies
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Families
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 641501]
(5)
1a
d3ti6a_
A:
1b
d3ti6b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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