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3TI4
Biol. Unit 1
Info
Asym.Unit (306 KB)
Biol.Unit 1 (591 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2009 PANDEMIC H1N1 NEURAMINIDASE COMPLEXED WITH LANINAMIVIR OCTANOATE
Authors
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng, J. Wang, H. Liu, H. Jiang, G. F. Gao
Date
:
20 Aug 11 (Deposition) - 16 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Calcium Binding, Glycosylation, Antiviral, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng J. He, J. Wang, H. Liu, H. Jiang, G. F. Gao
Structural And Functional Analysis Of Laninamivir And Its Octanoate Prodrug Reveals Group Specific Mechanisms For Influenza Na Inhibition
Plos Pathog. V. 7 02249 2011
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Hetero Components
(6, 32)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LVOa)
5b: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LVOb)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
10
Ligand/Ion
ACETATE ION
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
GOL
4
Ligand/Ion
GLYCEROL
5
LVO
4
Ligand/Ion
5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5-TRIDEOXY-7-O-METHYL-9-O-OCTANOYL-D-GLYCERO-D-GALACTO-NON-2-ENONIC ACID
6
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , NAG A:502 , HOH A:624 , HOH A:689 , HOH A:805 , HOH A:1225 , HOH A:1242
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501 , BMA A:503 , HOH A:619 , HOH A:1110 , ASN B:329 , HOH B:656
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
HOH A:490 , NAG A:502 , MAN A:504 , HOH A:572 , HOH A:619 , HOH A:629 , HOH A:656 , PHE B:390 , HOH B:816
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
BMA A:503 , HOH B:78 , ARG B:327 , ASP B:330 , ARG B:364 , LYS B:366 , GLU B:375 , ILE B:377
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
ASN A:88 , HOH A:591 , HOH A:736 , HOH A:750 , HOH A:834 , HOH A:1006
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
HOH A:5 , ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347
BINDING SITE FOR RESIDUE CA A 601
07
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , ASN A:389 , HOH A:488 , HOH A:744
BINDING SITE FOR RESIDUE CA A 602
08
AC8
SOFTWARE
HOH A:651 , HOH A:717 , HOH A:732
BINDING SITE FOR RESIDUE CA A 603
09
AC9
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:178 , GLU A:227 , SER A:246 , GLU A:277 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:535 , HOH A:723 , HOH A:956 , HOH A:974
BINDING SITE FOR RESIDUE LVO A 801
10
BC1
SOFTWARE
ILE A:427 , GLY A:429 , ARG A:430 , PRO A:431 , LYS A:432 , GLU A:433 , HOH A:599 , HOH A:612
BINDING SITE FOR RESIDUE ACT A 1
11
BC2
SOFTWARE
GLN A:395 , THR A:453 , VAL A:454
BINDING SITE FOR RESIDUE ACT A 471
12
BC3
SOFTWARE
ASN B:146 , ILE B:437 , HOH B:488 , HOH B:1030 , HOH B:1097
BINDING SITE FOR RESIDUE NAG B 501
13
BC4
SOFTWARE
ASN B:88 , HOH B:547 , HOH B:630 , HOH B:722 , HOH B:838
BINDING SITE FOR RESIDUE NAG B 505
14
BC5
SOFTWARE
HOH B:8 , ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 601
15
BC6
SOFTWARE
HOH B:24 , ASP B:379 , ASN B:381 , ASP B:387 , ASN B:389 , HOH B:610
BINDING SITE FOR RESIDUE CA B 602
16
BC7
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:156 , TRP B:178 , GLU B:227 , SER B:246 , GLU B:277 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , HOH B:524
BINDING SITE FOR RESIDUE LVO B 801
17
BC8
SOFTWARE
ILE B:427 , GLY B:429 , ARG B:430 , PRO B:431 , LYS B:432
BINDING SITE FOR RESIDUE ACT B 1
18
BC9
SOFTWARE
ASN A:208 , GLU B:128 , CYS B:129
BINDING SITE FOR RESIDUE ACT B 471
19
CC1
SOFTWARE
LEU A:127 , GLU A:128 , CYS A:129 , ILE A:163 , ASN B:208 , ILE B:210 , HOH B:703 , HOH B:842
BINDING SITE FOR RESIDUE GOL B 472
20
CC2
SOFTWARE
PRO B:93 , VAL B:94 , SER B:95 , TRP B:378 , HOH B:693 , HOH B:1001
BINDING SITE FOR RESIDUE GOL B 473
21
CC3
SOFTWARE
LYS B:84 , ASN B:234 , HOH B:691 , HOH B:820 , HOH B:907
BINDING SITE FOR RESIDUE ACT B 474
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ti4a_ (A:)
1b: SCOP_d3ti4b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 641501]
(5)
1a
d3ti4a_
A:
1b
d3ti4b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Sidechain
Hetero
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (306 KB)
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Header - Biol.Unit 1
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