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3TI3
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (298 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2009 PANDEMIC H1N1 NEURAMINIDASE COMPLEXED WITH LANINAMIVIR
Authors
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng, J. Wang, H. Liu, H. Jiang, G. F. Gao
Date
:
20 Aug 11 (Deposition) - 16 Nov 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Calcium Binding, Glycosylation, Antiviral, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Vavricka, Q. Li, Y. Wu, J. Qi, M. Wang, Y. Liu, F. Gao, J. Liu, E. Feng J. He, J. Wang, H. Liu, H. Jiang, G. F. Gao
Structural And Functional Analysis Of Laninamivir And Its Octanoate Prodrug Reveals Group Specific Mechanisms For Influenza Na Inhibition
Plos Pathog. V. 7 02249 2011
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVa)
4b: 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARB... (LNVb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
5
Ligand/Ion
CALCIUM ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
LNV
2
Ligand/Ion
5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5-TRIDEOXY-7-O-METHYL-D-GLYCERO-D-GALACTO-NON-2-ENONICACID
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , NAG A:502 , HOH A:524 , HOH A:966 , HOH A:983 , HOH A:1256
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501 , HOH A:857 , ASN B:329 , HOH B:674
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
ASN A:88 , HOH A:513 , HOH A:552 , HOH A:845 , HOH A:1181
BINDING SITE FOR RESIDUE NAG A 505
04
AC4
SOFTWARE
HOH A:4 , ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347
BINDING SITE FOR RESIDUE CA A 601
05
AC5
SOFTWARE
HOH A:42 , ASP A:379 , ASN A:381 , ASP A:387 , ASN A:389 , HOH A:689
BINDING SITE FOR RESIDUE CA A 602
06
AC6
SOFTWARE
HOH A:1302 , HOH B:716 , HOH B:1035
BINDING SITE FOR RESIDUE CA A 603
07
AC7
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:178 , ARG A:224 , GLU A:227 , SER A:246 , GLU A:276 , GLU A:277 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:512 , HOH A:556 , HOH A:657 , HOH A:823 , HOH A:873
BINDING SITE FOR RESIDUE LNV A 801
08
AC8
SOFTWARE
TRP A:403 , ILE A:427 , GLY A:429 , ARG A:430 , PRO A:431 , LYS A:432 , GLU A:433 , HOH A:545 , HOH A:606
BINDING SITE FOR RESIDUE GOL A 1
09
AC9
SOFTWARE
LEU A:127 , GLU A:128 , CYS A:129 , HOH A:498 , HOH A:661 , ASN B:208 , ILE B:210
BINDING SITE FOR RESIDUE GOL A 471
10
BC1
SOFTWARE
SER A:95 , GLN A:395 , THR A:453 , HOH A:1221
BINDING SITE FOR RESIDUE ACT A 472
11
BC2
SOFTWARE
ASN B:88 , HOH B:523 , HOH B:575 , HOH B:756 , HOH B:783 , HOH B:789 , HOH B:823 , HOH B:1271
BINDING SITE FOR RESIDUE NAG B 505
12
BC3
SOFTWARE
HOH B:28 , ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 601
13
BC4
SOFTWARE
HOH B:38 , ASP B:379 , ASN B:381 , ASP B:387 , ASN B:389 , HOH B:649
BINDING SITE FOR RESIDUE CA B 602
14
BC5
SOFTWARE
HOH B:67 , ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:156 , TRP B:178 , ARG B:224 , GLU B:227 , SER B:246 , GLU B:276 , GLU B:277 , ARG B:292 , ASN B:294 , ARG B:371 , TYR B:406 , HOH B:490 , HOH B:501 , HOH B:631 , HOH B:890
BINDING SITE FOR RESIDUE LNV B 801
15
BC6
SOFTWARE
TRP B:403 , ILE B:427 , GLY B:429 , ARG B:430 , PRO B:431 , LYS B:432 , GLU B:433 , HOH B:583
BINDING SITE FOR RESIDUE ACT B 1
16
BC7
SOFTWARE
ASN A:208 , GLY A:209 , ILE A:210 , TYR B:100 , LEU B:127 , GLU B:128 , CYS B:129 , ILE B:163 , LEU B:412D , HOH B:808
BINDING SITE FOR RESIDUE GOL B 471
17
BC8
SOFTWARE
SER B:95 , GLN B:395 , THR B:453 , HOH B:1281
BINDING SITE FOR RESIDUE ACT B 472
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ti3a_ (A:)
1b: SCOP_d3ti3b_ (B:)
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Classes
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 641501]
(5)
1a
d3ti3a_
A:
1b
d3ti3b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (159 KB)
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Header - Biol.Unit 1
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