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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3THM
Asym. Unit
Info
Asym.Unit (258 KB)
Biol.Unit 1 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FAS RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH FAB EP6B_B01
Authors
:
S. Zuger, C. Stirnimann, C. Briand, M. G. Grutter
Date
:
19 Aug 11 (Deposition) - 09 May 12 (Release) - 27 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : F,H,L
Biol. Unit 1: F,H,L (1x)
Keywords
:
Agonistic Antibody, Fab Fragment, Antibody-Receptor Complex, Tumor Necrosis Factor Receptor, Cysteine-Rich Domain, Fas, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Chodorge, S. Zuger, C. Stirnimann, C. Briand, L. Jermutus, M. G. Grutter, R. R. Minter
A Series Of Fas Receptor Agonist Antibodies That Demonstrat An Inverse Correlation Between Affinity And Potency.
Cell Death Differ. V. 19 1187 2012
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL L:3 , ASN L:25 , SER L:27 , HOH L:255 , NAG L:302 , FUC L:303 , HOH L:334 , HOH L:358
BINDING SITE FOR RESIDUE NAG L 301
2
AC2
SOFTWARE
GLN L:1 , VAL L:3 , NAG L:301
BINDING SITE FOR RESIDUE NAG L 302
3
AC3
SOFTWARE
ASN L:25 , HOH L:251 , NAG L:301 , HOH L:376
BINDING SITE FOR RESIDUE FUC L 303
4
AC4
SOFTWARE
ASN L:53 , ARG L:55 , ASP L:61 , SER L:64 , GLY L:65 , HOH L:308
BINDING SITE FOR RESIDUE EDO L 217
5
AC5
SOFTWARE
PRO L:117 , SER L:118 , VAL L:119 , LYS L:208
BINDING SITE FOR RESIDUE EDO L 218
6
AC6
SOFTWARE
SER L:157 , PRO L:158 , LYS L:160 , ALA L:161 , HIS L:192
BINDING SITE FOR RESIDUE EDO L 219
7
AC7
SOFTWARE
GLN L:171 , SER L:172 , HOH L:397
BINDING SITE FOR RESIDUE EDO L 220
8
AC8
SOFTWARE
LEU H:47 , HOH H:247 , SER L:2 , VAL L:3 , VAL L:100 , PHE L:101
BINDING SITE FOR RESIDUE EDO L 221
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013418 (C66R, chain F, )
2: VAR_018321 (N102S, chain F, )
3: VAR_013419 (R105W, chain F, )
4: VAR_020009 (T106I, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013418
C
82
R
TNR6_HUMAN
Disease (ALPS1A)
---
F
C
66
R
2
UniProt
VAR_018321
N
118
S
TNR6_HUMAN
Unclassified
---
F
N
102
S
3
UniProt
VAR_013419
R
121
W
TNR6_HUMAN
Disease (ALPS1A)
---
F
R
105
W
4
UniProt
VAR_020009
T
122
I
TNR6_HUMAN
Polymorphism
3218614
F
T
106
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TNFR_NGFR_2 (F:68-111|F:112-127)
2: TNFR_NGFR_1 (F:69-113|F:111-127)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNFR_NGFR_2
PS50050
TNFR/NGFR family cysteine-rich region domain profile.
TNR6_HUMAN
84-127
128-165
2
F:68-111
F:112-127
2
TNFR_NGFR_1
PS00652
TNFR/NGFR family cysteine-rich region signature.
TNR6_HUMAN
85-129
127-165
2
F:69-113
F:111-127
[
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Exons
(3, 3)
Info
All Exons
Exon 1.4 (F:36-50)
Exon 1.5 (F:50-96 (gaps))
Exon 1.6 (F:96-127 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000355740
2a
ENSE00001857233
chr10:
90750414-90750663
250
TNR6_HUMAN
1-10
10
0
-
-
1.4
ENST00000355740
4
ENSE00001271543
chr10:
90762786-90762951
166
TNR6_HUMAN
11-66
56
1
F:36-50
15
1.5
ENST00000355740
5
ENSE00000810604
chr10:
90767457-90767594
138
TNR6_HUMAN
66-112
47
1
F:50-96 (gaps)
47
1.6
ENST00000355740
6
ENSE00000810606
chr10:
90768646-90768754
109
TNR6_HUMAN
112-148
37
1
F:96-127 (gaps)
32
1.7a
ENST00000355740
7a
ENSE00001743001
chr10:
90770296-90770357
62
TNR6_HUMAN
148-169
22
0
-
-
1.7d
ENST00000355740
7d
ENSE00001686407
chr10:
90770510-90770572
63
TNR6_HUMAN
169-190
22
0
-
-
1.8
ENST00000355740
8
ENSE00001721137
chr10:
90771756-90771838
83
TNR6_HUMAN
190-217
28
0
-
-
1.10
ENST00000355740
10
ENSE00001742441
chr10:
90773100-90773124
25
TNR6_HUMAN
218-226
9
0
-
-
1.11h
ENST00000355740
11h
ENSE00001716028
chr10:
90773876-90775542
1667
TNR6_HUMAN
226-335
110
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3thml1 (L:1-111)
2a: SCOP_d3thml2 (L:112-214)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3thml1
L:1-111
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3thml2
L:112-214
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain F
Chain H
Chain L
Asymmetric Unit 1
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Asym.Unit (258 KB)
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