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3TGU
Asym. Unit
Info
Asym.Unit (681 KB)
Biol.Unit 1 (666 KB)
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Title
:
CYTOCHROME BC1 COMPLEX FROM CHICKEN WITH PFVS-DESIGNED MOA INHIBITOR BOUND
Authors
:
L. -S. Huang, G. -F. Yang, E. A. Berry
Date
:
17 Aug 11 (Deposition) - 04 Jul 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Cytochrome Bc1, Membrane Protein, Heme Protein, Rieske Iron Sulfur Protein, Cytochrome B, Cytochrome C1, Complex Iii, Mitochondrial Processing Protein, Ubiquinone, Oxidoreductase, Redox Enzyme, Respiratory Chain, Electron Transport, Heme, Inner Membrane, Membrane, Strobilurins Binding, Mitochondrion, Transmembrane, Iron, Mitochondrial Inner Membrane, Iron-Sulfur, Transit Peptide, Metal- Binding, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. F. Hao, F. Wang, H. Li, X. L. Zhu, W. C. Yang, L. S. Huang, J. W. Wu, E. A. Berry, G. F. Yang
Computational Discovery Of Picomolar Q(O) Site Inhibitors O Cytochrome Bc1 Complex.
J. Am. Chem. Soc. V. 134 11168 2012
[
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Hetero Components
(13, 60)
Info
All Hetero Components
01a: N-ACETYLMETHIONINE (AMEa)
01b: N-ACETYLMETHIONINE (AMEb)
02a: B-OCTYLGLUCOSIDE (BOGa)
02b: B-OCTYLGLUCOSIDE (BOGb)
02c: B-OCTYLGLUCOSIDE (BOGc)
02d: B-OCTYLGLUCOSIDE (BOGd)
02e: B-OCTYLGLUCOSIDE (BOGe)
03a: CARDIOLIPIN (CDLa)
03b: CARDIOLIPIN (CDLb)
03c: CARDIOLIPIN (CDLc)
03d: CARDIOLIPIN (CDLd)
04a: FE2/S2 (INORGANIC) CLUSTER (FESa)
04b: FE2/S2 (INORGANIC) CLUSTER (FESb)
05a: N-FORMYLMETHIONINE (FMEa)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
07a: HEME C (HECa)
07b: HEME C (HECb)
08a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
08b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
08c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
08d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
09a: PHOSPHATIDYLETHANOLAMINE (PEEa)
09b: PHOSPHATIDYLETHANOLAMINE (PEEb)
09c: PHOSPHATIDYLETHANOLAMINE (PEEc)
09d: PHOSPHATIDYLETHANOLAMINE (PEEd)
09e: PHOSPHATIDYLETHANOLAMINE (PEEe)
09f: PHOSPHATIDYLETHANOLAMINE (PEEf)
10a: (UNKa)
10b: (UNKb)
10c: (UNKc)
10d: (UNKd)
10e: (UNKe)
10f: (UNKf)
10g: (UNKg)
10h: (UNKh)
10i: (UNKi)
10j: (UNKj)
10k: (UNKk)
10l: (UNKl)
10m: (UNKm)
10n: (UNKn)
10o: (UNKo)
10p: (UNKp)
10q: (UNKq)
10r: (UNKr)
10s: (UNKs)
10t: (UNKt)
10u: (UNKu)
10v: (UNKv)
10w: (UNKw)
10x: (UNKx)
10y: (UNKy)
10z: (UNKz)
11a: UNKNOWN LIGAND (UNLa)
11b: UNKNOWN LIGAND (UNLb)
12a: COENZYME Q10, (2Z,6E,10Z,14E,18E,2... (UQa)
12b: COENZYME Q10, (2Z,6E,10Z,14E,18E,2... (UQb)
13a: METHYL (2E)-3-METHOXY-2-[2-({[6-ME... (WF3a)
13b: METHYL (2E)-3-METHOXY-2-[2-({[6-ME... (WF3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AME
2
Mod. Amino Acid
N-ACETYLMETHIONINE
2
BOG
5
Ligand/Ion
B-OCTYLGLUCOSIDE
3
CDL
4
Ligand/Ion
CARDIOLIPIN
4
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
FME
1
Mod. Amino Acid
N-FORMYLMETHIONINE
6
GOL
2
Ligand/Ion
GLYCEROL
7
HEC
2
Ligand/Ion
HEME C
8
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
9
PEE
6
Ligand/Ion
PHOSPHATIDYLETHANOLAMINE
10
UNK
26
Mod. Amino Acid
11
UNL
2
Ligand/Ion
UNKNOWN LIGAND
12
UQ
2
Ligand/Ion
COENZYME Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER
13
WF3
2
Ligand/Ion
METHYL (2E)-3-METHOXY-2-[2-({[6-METHYL-3-(TRIFLUOROMETHYL)QUINOXALIN-2-YL]OXY}METHYL)PHENYL]PROP-2-ENOATE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:45 , ILE C:46 , GLY C:49 , LEU C:50 , LEU C:52 , ALA C:53 , ARG C:81 , HIS C:84 , LEU C:124 , GLY C:131 , LEU C:134 , PRO C:135 , HIS C:183 , PRO C:187
BINDING SITE FOR RESIDUE HEM C 501
02
AC2
SOFTWARE
TRP C:32 , GLY C:35 , SER C:36 , HIS C:98 , ARG C:101 , SER C:107 , GLY C:117 , VAL C:118 , LEU C:120 , THR C:194 , HIS C:197 , LEU C:198 , SER C:206 , ASN C:207 , UQ C:504 , HOH C:601 , HOH C:606
BINDING SITE FOR RESIDUE HEM C 502
03
AC3
SOFTWARE
MET C:125 , PHE C:129 , TYR C:132 , VAL C:133 , GLY C:143 , ALA C:144 , ILE C:147 , LYS C:270 , PRO C:271 , GLU C:272 , TYR C:274 , PHE C:275 , ALA C:278 , TYR C:279 , LEU C:295
BINDING SITE FOR RESIDUE WF3 C 503
04
AC4
SOFTWARE
SER C:18 , LEU C:22 , ILE C:28 , ALA C:39 , HIS C:202 , SER C:206 , PHE C:221 , ASP C:229 , HEM C:502 , HOH C:605
BINDING SITE FOR RESIDUE UQ C 504
05
AC5
SOFTWARE
ALA C:30 , ASN C:33 , LYS C:228 , GLY C:232 , LEU C:235 , TYR D:220 , LYS D:223 , ARG D:224 , HIS F:72 , ARG F:73 , ARG G:40 , CDL G:101
BINDING SITE FOR RESIDUE CDL C 505
06
AC6
SOFTWARE
TRP C:31 , PHE C:96 , TYR C:104 , TYR C:105 , THR C:317 , TRP C:327 , GLN G:44 , CDL G:101
BINDING SITE FOR RESIDUE PEE C 506
07
AC7
SOFTWARE
TYR A:442 , HIS C:222 , ILE C:230 , PEE E:502
BINDING SITE FOR RESIDUE PEE C 507
08
AC8
SOFTWARE
PHE C:64 , ARG C:81 , PRO C:135 , ASN C:256 , PHE C:257 , TYR D:115
BINDING SITE FOR RESIDUE GOL C 508
09
AC9
SOFTWARE
VAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , PRO D:110 , ARG D:120 , TYR D:126 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160 , PRO D:163
BINDING SITE FOR RESIDUE HEC D 501
10
BC1
SOFTWARE
TYR C:76 , GLN D:200 , ARG D:203 , MET D:204 , LYS D:207 , BOG D:503 , ASN E:53 , GLN E:57
BINDING SITE FOR RESIDUE BOG D 502
11
BC2
SOFTWARE
GLN D:200 , ARG D:203 , BOG D:502
BINDING SITE FOR RESIDUE BOG D 503
12
BC3
SOFTWARE
CYS E:139 , HIS E:141 , LEU E:142 , CYS E:144 , CYS E:158 , HIS E:161 , SER E:163 , PRO E:175
BINDING SITE FOR RESIDUE FES E 501
13
BC4
SOFTWARE
TYR A:442 , PHE C:227 , ILE C:230 , PEE C:507 , MET D:222 , THR E:40 , THR E:47 , LYS E:52 , PHE J:14 , ALA J:21 , GLU J:32
BINDING SITE FOR RESIDUE PEE E 502
14
BC5
SOFTWARE
SER C:29 , ALA C:30 , TRP C:31 , TYR C:105 , CDL C:505 , PEE C:506 , HIS F:72 , ARG G:40 , PHE G:41
BINDING SITE FOR RESIDUE CDL G 101
15
BC6
SOFTWARE
TYR N:442 , HIS P:222
BINDING SITE FOR RESIDUE PEE N 502
16
BC7
SOFTWARE
GLN P:45 , ILE P:46 , GLY P:49 , LEU P:50 , LEU P:52 , ALA P:53 , ARG P:81 , HIS P:84 , ALA P:85 , LEU P:124 , GLY P:131 , LEU P:134 , PRO P:135 , HIS P:183 , PRO P:187
BINDING SITE FOR RESIDUE HEM P 501
17
BC8
SOFTWARE
TRP P:32 , GLY P:35 , LEU P:38 , HIS P:98 , ARG P:101 , SER P:107 , GLY P:117 , VAL P:118 , THR P:194 , HIS P:197 , LEU P:198 , LEU P:201 , SER P:206 , ASN P:207 , UQ P:505 , HOH P:601 , HOH P:607
BINDING SITE FOR RESIDUE HEM P 502
18
BC9
SOFTWARE
MET P:14 , SER P:18 , ILE P:195 , THR P:199 , HIS P:202
BINDING SITE FOR RESIDUE BOG P 503
19
CC1
SOFTWARE
MET P:125 , PHE P:129 , TYR P:132 , VAL P:133 , GLY P:143 , ALA P:144 , ILE P:147 , LYS P:270 , PRO P:271 , GLU P:272 , TYR P:274 , PHE P:275 , ALA P:278 , TYR P:279 , LEU P:295
BINDING SITE FOR RESIDUE WF3 P 504
20
CC2
SOFTWARE
SER P:18 , LEU P:19 , LEU P:22 , ILE P:28 , ALA P:39 , HIS P:202 , SER P:206 , PHE P:221 , ASP P:229 , HEM P:502
BINDING SITE FOR RESIDUE UQ P 505
21
CC3
SOFTWARE
SER P:29 , ALA P:30 , TRP P:31 , TYR P:105 , PEE P:507 , CDL Q:502 , ARG T:40 , PHE T:41 , GLN T:44
BINDING SITE FOR RESIDUE CDL P 506
22
CC4
SOFTWARE
TRP P:31 , PHE P:96 , TYR P:104 , TYR P:105 , THR P:317 , TRP P:327 , LEU P:333 , LEU P:334 , CDL P:506 , TYR S:29 , GLN T:44
BINDING SITE FOR RESIDUE PEE P 507
23
CC5
SOFTWARE
PHE P:64 , ARG P:81 , PRO P:135 , TYR Q:115
BINDING SITE FOR RESIDUE GOL P 508
24
CC6
SOFTWARE
VAL Q:36 , CYS Q:37 , CYS Q:40 , HIS Q:41 , ASN Q:105 , PRO Q:110 , ARG Q:120 , TYR Q:126 , PHE Q:153 , ILE Q:158 , GLY Q:159 , MET Q:160 , PRO Q:163
BINDING SITE FOR RESIDUE HEC Q 501
25
CC7
SOFTWARE
ALA P:30 , LYS P:228 , GLY P:232 , LEU P:235 , CDL P:506 , TYR Q:220 , LYS Q:223 , ARG Q:224 , HIS S:72 , ARG S:73 , ARG T:40
BINDING SITE FOR RESIDUE CDL Q 502
26
CC8
SOFTWARE
TYR P:76 , GLN Q:200 , ARG Q:203 , MET Q:204 , LYS Q:207 , BOG Q:504 , ASN R:53 , GLN R:57
BINDING SITE FOR RESIDUE BOG Q 503
27
CC9
SOFTWARE
GLN Q:200 , ARG Q:203 , BOG Q:503
BINDING SITE FOR RESIDUE BOG Q 504
28
DC1
SOFTWARE
CYS R:139 , HIS R:141 , LEU R:142 , CYS R:158 , HIS R:161 , SER R:163
BINDING SITE FOR RESIDUE FES R 501
29
DC2
SOFTWARE
TYR N:442 , PHE P:227 , ILE P:230 , MET Q:204 , MET Q:222 , TYR R:37 , THR R:40 , CYS R:44 , ALA R:48 , GLN R:57 , PHE W:14 , ARG W:15
BINDING SITE FOR RESIDUE PEE R 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (C:1-210)
2: RIESKE (E:96-194,R:96-194)
3: CYTB_CTER (C:211-380,P:211-380)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_CHICK
1-210
1
C:1-210
2
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_CHICK
172-270
2
E:96-194
R:96-194
3
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_CHICK
211-380
2
C:211-380
P:211-380
[
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Exons
(0, 0)
Info
All Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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