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3TGS
Biol. Unit 2
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Asym.Unit (250 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (242 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 CLADE C STRAIN C1086 GP120 CORE IN COMPLEX WITH NBD-556
Authors
:
Y. D. Kwon, P. D. Kwong
Date
:
17 Aug 11 (Deposition) - 04 Apr 12 (Release) - 17 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Hiv-1 Gp120, Clade C1086, Complex, Nbd-556, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. D. Kwon, A. Finzi, X. Wu, C. Dogo-Isonagie, L. K. Lee, L. R. Moore, S. D. Schmidt, J. Stuckey, Y. Yang, T. Zhou, J. Zhu, D. A. Vicic, A. K. Debnath, L. Shapiro, C. A. Bewley, J. R. Mascola, J. G. Sodroski, P. D. Kwong
Unliganded Hiv-1 Gp120 Core Structures Assume The Cd4-Bound Conformation With Regulation By Quaternary Interactions And Variable Loops.
Proc. Natl. Acad. Sci. Usa V. 109 5663 2012
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: N-(4-CHLOROPHENYL)-N'-(2,2,6,6-TET... (03Ga)
1b: N-(4-CHLOROPHENYL)-N'-(2,2,6,6-TET... (03Gb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
03G
2
Ligand/Ion
N-(4-CHLOROPHENYL)-N'-(2,2,6,6-TETRAMETHYLPIPERIDIN-4-YL)ETHANEDIAMIDE
2
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:234 , THR A:236 , PRO A:238 , ILE A:272 , LEU A:277
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
ASN A:262 , CYS A:445 , ASN A:446 , SER A:447 , NAG A:509
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
ASN A:276 , THR A:278 , ASN A:279 , THR B:278
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
GLU A:268 , ILE A:270 , ASN A:289 , LYS A:344 , GLU A:348
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
GLU A:335 , SER A:336 , ASN A:339 , TYR A:403 , ARG A:408 , SER A:409 , GLY A:412
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
THR A:373 , ASN A:386 , SER A:388
BINDING SITE FOR RESIDUE NAG A 506
07
AC7
SOFTWARE
VAL A:255 , GLU A:370 , PHE A:376 , ASN A:377 , PHE A:382 , ILE A:424 , ASN A:425 , MET A:426 , TRP A:427 , GLU A:429 , GLY A:473 , MET A:475 , HOH A:635
BINDING SITE FOR RESIDUE 03G A 507
08
AC8
SOFTWARE
PRO A:363 , ASP A:389 , ASN A:392 , ASN A:404 , THR A:406
BINDING SITE FOR RESIDUE NAG A 508
09
AC9
SOFTWARE
ASN A:262 , SER A:291 , ASN A:448 , NAG A:502 , HOH A:646 , GLU B:290
BINDING SITE FOR RESIDUE NAG A 509
10
BC1
SOFTWARE
ASN B:234 , THR B:236 , PRO B:238 , SER B:274
BINDING SITE FOR RESIDUE NAG B 501
11
BC2
SOFTWARE
VAL B:255 , PHE B:376 , ASN B:377 , PHE B:382 , ILE B:424 , ASN B:425 , MET B:426 , TRP B:427 , VAL B:430 , GLY B:473 , ASP B:474 , MET B:475
BINDING SITE FOR RESIDUE 03G B 502
12
BC3
SOFTWARE
ASP B:211 , VAL B:254 , ASN B:262 , ASN B:377 , CYS B:445 , ASN B:446 , SER B:447
BINDING SITE FOR RESIDUE NAG B 503
13
BC4
SOFTWARE
ASN A:446 , GLU B:268 , GLU B:269 , ASN B:289 , GLU B:290 , GLU B:348
BINDING SITE FOR RESIDUE NAG B 504
14
BC5
SOFTWARE
ASN B:386 , SER B:388 , HOH B:632
BINDING SITE FOR RESIDUE NAG B 505
15
BC6
SOFTWARE
ASP B:389 , ASN B:392 , THR B:406 , GLY B:407
BINDING SITE FOR RESIDUE NAG B 506
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (250 KB)
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Biol.Unit 1 (242 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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