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3TF6
Biol. Unit 2
Info
Asym.Unit (184 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN (C87S MUTANT) IN COMPLEX WITH EUROPIUM AND THE SIDEROPHORE ANALOG TREN(CAM)(1,2-HOPO)2
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
15 Aug 11 (Deposition) - 07 Sep 11 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Antimicrobial Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Correnti, V. Richardson, A. K. Sia, A. D. Bandaranayake, M. Ruiz, Y. Suryo Rahmanto, Z. Kovacevic, M. C. Clifton, M. A. Holmes, B. K. Kaiser, J. Barasch, K. N. Raymond, D. R. Richardson, R. K. Strong
Siderocalin/Lcn2/Ngal/24P3 Does Not Drive Apoptosis Through Gentisic Acid Mediated Iron Withdrawal In Hematopoietic Cel Lines.
Plos One V. 7 43696 2012
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: 2,3-DIHYDROXY-BENZOIC ACID (DBHa)
2b: 2,3-DIHYDROXY-BENZOIC ACID (DBHb)
2c: 2,3-DIHYDROXY-BENZOIC ACID (DBHc)
3a: EUROPIUM ION (EUa)
3b: EUROPIUM ION (EUb)
3c: EUROPIUM ION (EUc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DBH
1
Ligand/Ion
2,3-DIHYDROXY-BENZOIC ACID
3
EU
-1
Ligand/Ion
EUROPIUM ION
4
GOL
-1
Ligand/Ion
GLYCEROL
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LYS B:125 , DBH B:216
BINDING SITE FOR RESIDUE EU B 206
2
AC6
SOFTWARE
TYR B:106 , PHE B:123 , LYS B:134 , EU B:206
BINDING SITE FOR RESIDUE DBH B 216
3
AC7
SOFTWARE
VAL B:33 , TYR B:52 , THR B:54 , ARG B:81 , PHE B:123 , LYS B:134 , THR B:136 , TYR B:138
BINDING SITE FOR RESIDUE SO4 B 221
4
BC9
SOFTWARE
LYS B:75
BINDING SITE FOR RESIDUE CL B 183
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
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All PROSITE Patterns/Profiles
1: LIPOCALIN (B:21-34)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
NGAL_HUMAN
41-54
1
-
B:21-34
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3tf6a_ (A:)
1b: SCOP_d3tf6b_ (B:)
1c: SCOP_d3tf6c_ (C:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Neutrophil gelatinase-associated lipocalin (NGAL)
(28)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d3tf6a_
A:
1b
d3tf6b_
B:
1c
d3tf6c_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (184 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
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